Evaluating the usefulness of protein structure models for molecular replacement. - Alejandro Giorgetti; Domenico Raimondo; Adriana Erica Miele; Anna Tramontano (ECCB/JBI, 2005)

NMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental constraints. - Davide Martin Heller; Alejandro Giorgetti (Nucleic Acids Res., 2010)

S-BLOSUM: Classification of 2D Shapes with Biological Sequence Alignment. - Pietro Lovato; Alessio Milanese; Cesare Centomo; Alejandro Giorgetti; Manuele Bicego (ICPR, 2014)

A Multimodal Approach for Protein Remote Homology Detection. - Pietro Lovato; Alejandro Giorgetti; Manuele Bicego (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Unifying view of mechanical and functional hotspots across class A GPCRs. - Luca Ponzoni; Giulia Rossetti; Luca Maggi; Alejandro Giorgetti; Paolo Carloni; Cristian Micheletti (PLoS Comput. Biol., 2017)

MIRATE: MIps RATional dEsign Science Gateway. - Mirko Busato; Rosario Distefano; Ferdia Bates; Kal Karim; Alessandra Maria Bossi; José Manuel López Vilariño; Sergey Piletsky; Nicola Bombieri; Alejandro Giorgetti (J. Integr. Bioinform., 2018)

MERMAID: dedicated web server to prepare and run coarse-grained membrane protein dynamics. - Mangesh Damre; Alessandro Marchetto 002; Alejandro Giorgetti (Nucleic Acids Res., 2019)

The Vesicle Builder - A Membrane Packing Algorithm for the CELLmicrocosmos MembraneEditor. - Beatrice Giuliari; Manuel Kösters; Jan Zhou; Tim Dingersen; André J. Heissmann; Ralf Rotzoll; Jens Krüger 002; Alejandro Giorgetti; Björn Sommer 001 (MolVa@Eurographics/EuroVis, 2020)

Ligand Pose Predictions for Human G Protein-Coupled Receptors: Insights from the Amber-Based Hybrid Molecular Mechanics/Coarse-Grained Approach. - Jakob Schneider; Ksenia Korshunova; Zeineb Si Chaib; Alejandro Giorgetti; Mercedes Alfonso-Prieto; Paolo Carloni (J. Chem. Inf. Model., 2020)

pyGOMoDo: GPCRs modeling and docking with python. - Rui Pedro Ribeiro; Alejandro Giorgetti (Bioinform., 2023)

Structural Systems Biology Toolkit (SSBtoolkit): From Molecular Structure to Subcellular Signaling Pathways. - Rui Pedro Ribeiro; Jonas Goßen; Giulia Rossetti; Alejandro Giorgetti (J. Chem. Inf. Model., 2025)