Informed Parsimonious Inference of Prototypical Genetic Sequences. - Aleksandar Milosavljevic; David Haussler; Jerzy Jurka (COLT, 1989)

Discovering Sequence Similarity by the Algorithmic Significance Method. - Aleksandar Milosavljevic (ISMB, 1993)

Discovering simple DNA sequences by the algorithmic significance method. - Aleksandar Milosavljevic; Jerzy Jurka (Comput. Appl. Biosci., 1993)

Discovery by Minimal Length Encoding: A Case Study in Molecular Evolution. - Aleksandar Milosavljevic; Jerzy Jurka (Mach. Learn., 1993)

Sequence Comparisons via Algorithmic Mutual Information. - Aleksandar Milosavljevic (ISMB, 1994)

DNA Sequence Recognition by Hybridization to Short Oligomers. - Aleksandar Milosavljevic (J. Comput. Biol., 1995)

Discovering Dependencies via Algorithmic Mutual Information: A Case Study in DNA Sequence Comparisons. - Aleksandar Milosavljevic (Mach. Learn., 1995)

Genome-Scale DNA Sequence Recognition by Hybridization to Short Oligomers. - Aleksandar Milosavljevic; Suzana Savkovic; Radomir Crkvenjakov; David Salbego; Hope Serrato; Heidi Kreuzer; Anne Gemmell; Shawna Batus; Danica Grujic; Susan Carnahan; Jovanka Tepavcevic (ISMB, 1996)

Discovering Patterns in DNA Sequences by the Algorithmic Significance Method. - Aleksandar Milosavljevic (Pattern Discovery in Biomolecular Data, 1999)

The Economic Value of Bioinformation. - Aleksandar Milosavljevic (Bioinform., 2000)

Pooled Genomic Indexing (PGI): Mathematical Analysis and Experiment Design. - Miklós Csürös; Aleksandar Milosavljevic (WABI, 2002)

Pooled Genomic Indexing (PGI): Analysis and Design of Experiments. - Miklós Csürös; Aleksandar Milosavljevic (J. Comput. Biol., 2004)

Prediction of Bus Motion and Continuous Query Processing for Traveler Information Services. - Bratislav Predic; Dragan Stojanovic; Slobodanka Djordjevic-Kajan; Aleksandar Milosavljevic; Dejan D. Rancic (ADBIS, 2007)

GIS as a Tool in Emergency Management Process. - Leonid Stoimenov; Aleksandar Milosavljevic; Aleksandar S. Stanimirovic (World Congress on Engineering, 2007)

Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies. - Cristian Coarfa; Aleksandar Milosavljevic (Pacific Symposium on Biocomputing, 2008)

Impacts of Applying Automated Vehicle Location Systems to Public Bus Transport Management. - Bratislav Predic; Dejan D. Rancic; Aleksandar Milosavljevic (J. Res. Pract. Inf. Technol., 2010)

Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing. - Cristian Coarfa; Fuli Yu; Christopher A. Miller 003; Zuozhou Chen; R. Alan Harris; Aleksandar Milosavljevic (BMC Bioinform., 2010)

GIS-augmented video surveillance. - Aleksandar Milosavljevic; Aleksandar M. Dimitrijevic; Dejan D. Rancic (Int. J. Geogr. Inf. Sci., 2010)

Enabling Atlas2 personal genome analysis on the cloud. - Uday S. Evani; Danny Challis; Jin Yu 003; Andrew R. Jackson; Sameer Paithankar; Matthew N. Bainbridge; Cristian Coarfa; Aleksandar Milosavljevic; Fuli Yu (GENSiPS, 2011)

An integrative variant analysis suite for whole exome next-generation sequencing data. - Danny Challis; Jin Yu 003; Uday S. Evani; Andrew R. Jackson; Sameer Paithankar; Cristian Coarfa; Aleksandar Milosavljevic; Richard A. Gibbs; Fuli Yu (BMC Bioinform., 2012)

The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences. - Kevin Riehle; Cristian Coarfa; Andrew R. Jackson; Jun Ma; Arpit Tandon; Sameer Paithankar; Sriram Raghuraman; Toni-Ann Mistretta; Delphine Saulnier; Sabeen Raza; Maria Diaz; Robert Shulman; et al. (BMC Bioinform., 2012)

Identification of cancer fusion drivers using network fusion centrality. - Chia-Chin Wu; Kalpana Kannan; Steven Lin; Laising Yen; Aleksandar Milosavljevic (Bioinform., 2013)

Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools. - Cristian Coarfa; Christina Pichot; Andrew R. Jackson; Arpit Tandon; Viren Amin; Sriram Raghuraman; Sameer Paithankar; Adrian V. Lee; Sean E. McGuire; Aleksandar Milosavljevic (BMC Bioinform., 2014)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)

Integrating Genomic Resources with Electronic Health Records using the HL7 Infobutton Standard. - Casey L. Overby; Guilherme Del Fiol; Wendy S. Rubinstein; Donna R. Maglott; Tristan Nelson; Aleksandar Milosavljevic; Christa Martin; Scott Goehringer; Robert R. Freimuth; Marc S. Williams; Bret S. E. Heale (Appl. Clin. Inform., 2016)

Integration of GIS and video surveillance. - Aleksandar Milosavljevic; Dejan D. Rancic; Aleksandar M. Dimitrijevic; Bratislav Predic; Vladan Mihajlovic (Int. J. Geogr. Inf. Sci., 2016)

Comparative Finite Element Analysis of Patient-Specific Tricuspid and Bicuspid Aortic Valve. - Smiljana Djorovic; Nenad Filipovic; Aleksandar Milosavljevic; Lazar U. Velicki (BIBE, 2017)

A Method for Estimating Surveillance Video Georeferences. - Aleksandar Milosavljevic; Dejan D. Rancic; Aleksandar M. Dimitrijevic; Bratislav Predic; Vladan Mihajlovic (ISPRS Int. J. Geo Inf., 2017)

Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software. - Clémentine Decamps; Florian Privé; Raphael Bacher; Daniel Jost 002; Arthur Waguet; Eugene Andres Houseman; Eugene Lurie; Pavlo Lutsik; Aleksandar Milosavljevic; Michael Scherer; Michael G. B. Blum; Magali Richard (BMC Bioinform., 2020)

Identification of Salt Deposits on Seismic Images Using Deep Learning Method for Semantic Segmentation. - Aleksandar Milosavljevic (ISPRS Int. J. Geo Inf., 2020)

Automated Processing of Remote Sensing Imagery Using Deep Semantic Segmentation: A Building Footprint Extraction Case. - Aleksandar Milosavljevic (ISPRS Int. J. Geo Inf., 2020)

CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models. - Lillian R. Thistlethwaite; Varduhi Petrosyan; Xiqi Li; Marcus J. Miller; Sarah H. Elsea; Aleksandar Milosavljevic (PLoS Comput. Biol., 2021)

Correction: CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models. - Lillian R. Thistlethwaite; Varduhi Petrosyan; Xiqi Li; Marcus J. Miller; Sarah H. Elsea; Aleksandar Milosavljevic (PLoS Comput. Biol., 2021)

tmVar 3.0: an improved variant concept recognition and normalization tool. - Chih-Hsuan Wei; Alexis Allot; Kevin Riehle; Aleksandar Milosavljevic; Zhiyong Lu (Bioinform., 2022)

String Diagram Rewriting Modulo Commutative Monoid Structure. - Aleksandar Milosavljevic; Fabio Zanasi (CoRR, 2022)

An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs. - Predrag Obradovic; Vladimir B. Kovacevic; Xiqi Li; Aleksandar Milosavljevic (Entropy, 2022)

String Diagram Rewriting Modulo Commutative (Co)Monoid Structure. - Aleksandar Milosavljevic; Robin Piedeleu; Fabio Zanasi (CALCO, 2023)

Imagelytics: A Deep Learning-Based Image Classification Tool to Support Bioassessment. - Aleksandar Milosavljevic; Bratislav Predic; Djuradj Milosevic (DCAI (3), 2023)

Deconvolution of cancer cell states by the XDec-SM method. - Oscar D. Murillo; Varduhi Petrosyan; Emily L. LaPlante; Lacey E. Dobrolecki; Michael T. Lewis; Aleksandar Milosavljevic (PLoS Comput. Biol., 2023)

CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase. - Kilannin Krysiak; Arpad M. Danos; Jason Saliba; Joshua F. McMichael; Adam C. Coffman; Susanna Kiwala; Erica K. Barnell; Lana Sheta; Cameron J. Grisdale; Lynzey Kujan; Shahil Pema; Jake Lever; et al. (Nucleic Acids Res., 2023)

Efficient Distortion Mitigation and Partition Reduction in Mapping Global Geodata: Dual Orthogonal Equidistant Cylindrical Projection Approach. - Aleksandar M. Dimitrijevic; Aleksandar Milosavljevic; Dejan D. Rancic (ISPRS Int. J. Geo Inf., 2023)

Rewriting for Symmetric Monoidal Categories with Commutative (Co)Monoid Structure. - Aleksandar Milosavljevic; Robin Piedeleu; Fabio Zanasi (Log. Methods Comput. Sci., 2025)

Playbook workflow builder: Interactive construction of bioinformatics workflows. - Daniel J. B. Clarke; John Erol Evangelista; Zhuorui Xie; Giacomo B. Marino; Anna I. Byrd; Mano Ram Maurya; Sumana Srinivasan; Keyang Yu; Varduhi Petrosyan; Matthew E. Roth; Miroslav Milinkov; Charles Hadley King; et al. (PLoS Comput. Biol., 2025)