Indexing Schemes for Similarity Search: an Illustrated Paradigm. - Vladimir Pestov; Aleksandar Stojmirovic (Fundam. Informaticae, 2006)

Indexing schemes for similarity search in datasets of short protein fragments. - Aleksandar Stojmirovic; Vladimir Pestov (Inf. Syst., 2007)

Information Flow in Interaction Networks. - Aleksandar Stojmirovic; Yi-Kuo Yu (J. Comput. Biol., 2007)

The effectiveness of position- and composition-specific gap costs for protein similarity searches. - Aleksandar Stojmirovic; E. Michael Gertz; Stephen F. Altschul; Yi-Kuo Yu (ISMB, 2008)

Quasi-metrics, Similarities and Searches: aspects of geometry of protein datasets - Aleksandar Stojmirovic (CoRR, 2008)

ITM Probe: analyzing information flow in protein networks. - Aleksandar Stojmirovic; Yi-Kuo Yu (Bioinform., 2009)

Geometric Aspects of Biological Sequence Comparison. - Aleksandar Stojmirovic; Yi-Kuo Yu (J. Comput. Biol., 2009)

Robust and accurate data enrichment statistics via distribution function of sum of weights. - Aleksandar Stojmirovic; Yi-Kuo Yu (Bioinform., 2010)

ppiTrim: constructing non-redundant and up-to-date interactomes. - Aleksandar Stojmirovic; Yi-Kuo Yu (Database J. Biol. Databases Curation, 2011)

CytoITMprobe: a network information flow plugin for Cytoscape - Aleksandar Stojmirovic; Alexander Bliskovsky; Yi-Kuo Yu (CoRR, 2011)

CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores. - Aleksandar Stojmirovic; Alexander Bliskovsky; Yi-Kuo Yu (Bioinform., 2012)

Information Flow in Interaction Networks II: Channels, Path Lengths, and Potentials. - Aleksandar Stojmirovic; Yi-Kuo Yu (J. Comput. Biol., 2012)

PFMFind: A System for Discovery of Peptide Homology and Function. - Aleksandar Stojmirovic; Peter Andreae; Mike Boland; Thomas William Jordan; Vladimir Pestov (SISAP, 2013)

Topology-function conservation in protein-protein interaction networks. - Darren Davis; Ömer Nebil Yaveroglu; Noël Malod-Dognin; Aleksandar Stojmirovic; Natasa Przulj (Bioinform., 2015)

Log-odds sequence logos. - Yi-Kuo Yu; John A. Capra; Aleksandar Stojmirovic; David Landsman; Stephen F. Altschul (Bioinform., 2015)

Automatic estimation of ulcerative colitis severity from endoscopy videos using ordinal multi-instance learning. - Evan Schwab; Gabriela Oana Cula; Kristopher Standish; Stephen S. F. Yip; Aleksandar Stojmirovic; Louis Ghanem; Christel Chehoud (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2022)