The new SIMD Implementation of the Smith-Waterman Algorithm on Cell Microprocessor. - Witold R. Rudnicki; Aleksander Jankowski; Aleksander Modzelewski; Aleksander Piotrowski; Adam Zadrozny (Fundam. Informaticae, 2009)

Boruta - A System for Feature Selection. - Miron B. Kursa; Aleksander Jankowski; Witold R. Rudnicki (Fundam. Informaticae, 2010)

Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data. - Aleksander Jankowski; Jerzy Tiuryn; Shyam Prabhakar (Bioinform., 2016)

Enhanceosome transcription factors preferentially dimerize with high mobility group proteins. - Aleksander Jankowski; Paulina Obara; Utsav Mathur; Jerzy Tiuryn (BMC Syst. Biol., 2016)