WindowMasker: window-based masker for sequenced genomes. - Aleksandr Morgulis; E. Michael Gertz; Alejandro A. Schäffer; Richa Agarwala (Bioinform., 2006)

A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences. - Aleksandr Morgulis; E. Michael Gertz; Alejandro A. Schäffer; Richa Agarwala (J. Comput. Biol., 2006)

Database indexing for production MegaBLAST searches. - Aleksandr Morgulis; George Coulouris; Yan Raytselis; Thomas L. Madden; Richa Agarwala; Alejandro A. Schäffer (Bioinform., 2008)