CABS-dock standalone: a toolbox for flexible protein-peptide docking. - Mateusz Kurcinski; Maciej Pawel Ciemny; Tymoteusz Oleniecki; Aleksander Kuriata; Aleksandra E. Badaczewska-Dawid; Andrzej Kolinski; Sebastian Kmiecik (Bioinform., 2019)

HaDeX: an R package and web-server for analysis of data from hydrogen-deuterium exchange mass spectrometry experiments. - Weronika Puchala; Michal Burdukiewicz; Michal Kistowski; Katarzyna A. Dabrowska; Aleksandra E. Badaczewska-Dawid; Dominik Cysewski; Michal Dadlez; Yann Ponty (Bioinform., 2020)

Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement. - Aleksandra E. Badaczewska-Dawid; Sebastian Kmiecik; Michal Kolinski (Briefings Bioinform., 2021)

A3D database: structure-based predictions of protein aggregation for the human proteome. - Aleksandra E. Badaczewska-Dawid; Javier Garcia-Pardo; Aleksander Kuriata; Jordi Pujols; Salvador Ventura; Sebastian Kmiecik (Bioinform., 2022)

MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes. - Aleksandra E. Badaczewska-Dawid; Chandran Nithin; Karol Wroblewski; Mateusz Kurcinski; Sebastian Kmiecik (Nucleic Acids Res., 2022)

Structure prediction of linear and cyclic peptides using CABS-flex. - Aleksandra E. Badaczewska-Dawid; Karol Wroblewski; Mateusz Kurcinski; Sebastian Kmiecik (Briefings Bioinform., 2024)