Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes. - Aleksej Zelezniak; Tune H. Pers; Simão Soares; Mary Elizabeth Patti; Kiran Raosaheb Patil (PLoS Comput. Biol., 2010)

Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes. - Aleksej Zelezniak; Steven Sheridan; Kiran Raosaheb Patil (PLoS Comput. Biol., 2014)

Performance of regression models as a function of experiment noise. - Gang Li; Jan Zrimec; Boyang Ji; Jun Geng; Johan Larsbrink; Aleksej Zelezniak; Jens Nielsen; Martin K. M. Engqvist (CoRR, 2019)

Learning the regulatory grammar of DNA for gene expression engineering. - Jan Zrimec; Aleksej Zelezniak (BCB, 2020)

Parallel Factor Analysis Enables Quantification and Identification of Highly Convolved Data-Independent-Acquired Protein Spectra. - Filip Buric; Jan Zrimec; Aleksej Zelezniak (Patterns, 2020)

Expanding functional protein sequence spaces using generative adversarial networks. - Donatas Repecka; Vykintas Jauniskis; Laurynas Karpus; Elzbieta Rembeza; Irmantas Rokaitis; Jan Zrimec; Simona Poviloniene; Audrius Laurynenas; Sandra Viknander; Wissam Abuajwa; Otto Savolainen; Rolandas Meskys; et al. (Nat. Mach. Intell., 2021)