POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins. - Aleksey A. Porollo; Rafal Adamczak; Jaroslaw Meller (Bioinform., 2004)

Linear Regression Models for Solvent Accessibility Prediction in Proteins. - Michael Wagner 010; Rafal Adamczak; Aleksey A. Porollo; Jaroslaw Meller (J. Comput. Biol., 2005)

Enhanced recognition of protein transmembrane domains with prediction-based structural profiles. - Baoqiang Cao; Aleksey A. Porollo; Rafal Adamczak; Mark Jarrell; Jaroslaw Meller (Bioinform., 2006)

Biases in Lipid Accessibility Prediction Can Be Used for the Recognition of Protein Interaction Interfaces in Soluble Proteins. - Aleksey A. Porollo; Baoqiang Cao; Jaroslaw Meller (BIOCOMP, 2007)

Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D. - Aleksey A. Porollo; Jaroslaw Meller (BMC Bioinform., 2007)

POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations. - Aleksey A. Porollo; Jaroslaw Meller (Nucleic Acids Res., 2010)

EC2KEGG: a command line tool for comparison of metabolic pathways. - Aleksey A. Porollo (Source Code Biol. Medicine, 2014)

CoeViz: a web-based tool for coevolution analysis of protein residues. - Frazier N. Baker; Aleksey A. Porollo (BMC Bioinform., 2016)

CoeViz: A Web-Based Integrative Platform for Interactive Visualization of Large Similarity and Distance Matrices. - Frazier N. Baker; Aleksey A. Porollo (Data, 2018)

CoeViz 2: Protein Graphs Derived From Amino Acid Covariance. - Daniel Corcoran; Nicholas Maltbie; Shivchander Sudalairaj; Frazier N. Baker; Joseph Hirschfeld; Aleksey A. Porollo (Frontiers Bioinform., 2021)