Randomization of real-valued matrices for assessing the significance of data mining results. - Markus Ojala; Niko Vuokko; Aleksi Kallio; Niina Haiminen; Heikki Mannila (SDM, 2008)

Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets. - Laura Elo; Jukka Hiissa; Jarno Tuimala; Aleksi Kallio; Eija Korpelainen; Tero Aittokallio (Briefings Bioinform., 2009)

Randomization methods for assessing data analysis results on real-valued matrices. - Markus Ojala; Niko Vuokko; Aleksi Kallio; Niina Haiminen; Heikki Mannila (Stat. Anal. Data Min., 2009)

Randomization techniques for assessing the significance of gene periodicity results. - Aleksi Kallio; Niko Vuokko; Markus Ojala; Niina Haiminen; Heikki Mannila (BMC Bioinform., 2011)

Hadoop-BAM: directly manipulating next generation sequencing data in the cloud. - Matti Niemenmaa; Aleksi Kallio; André Schumacher; Petri Klemelä; Eija Korpelainen; Keijo Heljanko (Bioinform., 2012)

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop. - André Schumacher; Luca Pireddu; Matti Niemenmaa; Aleksi Kallio; Eija Korpelainen; Gianluigi Zanetti; Keijo Heljanko (Bioinform., 2014)