Ras Conformational Switching: Simulating Nucleotide-Dependent Conformational Transitions with Accelerated Molecular Dynamics. - Barry J. Grant; Alemayehu A. Gorfe; James Andrew McCammon (PLoS Comput. Biol., 2009)

The Distinct Conformational Dynamics of K-Ras and H-Ras A59G. - Suryani Lukman; Barry J. Grant; Alemayehu A. Gorfe; Guy H. Grant; James Andrew McCammon (PLoS Comput. Biol., 2010)

The Role of Conserved Waters in Conformational Transitions of Q61H K-ras. - Priyanka Prakash; Abdallah Sayyed-Ahmad; Alemayehu A. Gorfe (PLoS Comput. Biol., 2012)

LIBSA - A Method for the Determination of Ligand-Binding Preference to Allosteric Sites on Receptor Ensembles. - Harrison J. Hocker; Nandini Rambahal; Alemayehu A. Gorfe (J. Chem. Inf. Model., 2014)

pMD-Membrane: A Method for Ligand Binding Site Identification in Membrane-Bound Proteins. - Priyanka Prakash; Abdallah Sayyed-Ahmad; Alemayehu A. Gorfe (PLoS Comput. Biol., 2015)