A multistep bioinformatic approach detects putative regulatory elements in gene promoters. - Stefania Bortoluzzi; Alessandro Coppe; Andrea Bisognin; Cinzia Pizzi; Gian Antonio Danieli (BMC Bioinform., 2005)

REEF: searching REgionally Enriched Features in genomes. - Alessandro Coppe; Gian Antonio Danieli; Stefania Bortoluzzi (BMC Bioinform., 2006)

Novel definition files for human GeneChips based on GeneAnnot. - Francesco Ferrari; Stefania Bortoluzzi; Alessandro Coppe; Alexandra Sirota; Marilyn Safran; Michael Shmoish; Sergio Ferrari; Doron Lancet; Gian Antonio Danieli; Silvio Bicciato (BMC Bioinform., 2007)

A-MADMAN: Annotation-based microarray data meta-analysis tool. - Andrea Bisognin; Alessandro Coppe; Francesco Ferrari; Davide Risso; Chiara Romualdi; Silvio Bicciato; Stefania Bortoluzzi (BMC Bioinform., 2009)

MAGIA, a web-based tool for miRNA and Genes Integrated Analysis. - Gabriele Sales; Alessandro Coppe; Andrea Bisognin; Marta Biasiolo; Stefania Bortoluzzi; Chiara Romualdi (Nucleic Acids Res., 2010)

MAGIA2: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). - Andrea Bisognin; Gabriele Sales; Alessandro Coppe; Stefania Bortoluzzi; Chiara Romualdi (Nucleic Acids Res., 2012)

iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data. - Andrea Binatti; Silvia Bresolin; Stefania Bortoluzzi; Alessandro Coppe (Briefings Bioinform., 2021)