Learning Approach to Analyze Tumour Heterogeneity in DCE-MRI Data During Anti-cancer Treatment. - Alessandro Daducci; Umberto Castellani; Marco Cristani; Paolo Farace; Pasquina Marzola; Andrea Sbarbati; Vittorio Murino (AIME, 2009)

Towards a diffusion image processing validation and accuracy prediction framework. - Francesca Pizzorni Ferrarese; Alessandro Daducci; Meritxell Bach Cuadra; Alia Lemkaddem; Cristina Granziera; Jean-Philippe Thiran; Gloria Menegaz (ICIP, 2011)

The Connectome Viewer Toolkit: An Open Source Framework to Manage, Analyze, and Visualize Connectomes. - Stephan Gerhard; Alessandro Daducci; Alia Lemkaddem; Reto Meuli; Jean-Philippe Thiran; Patric Hagmann (Frontiers Neuroinformatics, 2011)

A multi-center study: Intra-scan and inter-scan variability of diffusion spectrum imaging. - Alia Lemkaddem; Alessandro Daducci; Serge Vulliémoz; Kieran O'Brien; François Lazeyras; Martinus Hauf; Roland Wiest; Reto Meuli; Margitta Seeck; Gunnar Krueger; Jean-Philippe Thiran (NeuroImage, 2012)

A convex optimization framework for global tractography. - Alessandro Daducci; Alessandro Dal Palù; Alia Lemkaddem; Jean-Philippe Thiran (ISBI, 2013)

3-D Residual Eddy Current Field Characterisation: Applied to Diffusion Weighted Magnetic Resonance Imaging. - Kieran O'Brien; Alessandro Daducci; Nils Kickler; François Lazeyras; Rolf Gruetter; Thorsten Feiweier; Gunnar Krueger (IEEE Trans. Medical Imaging, 2013)

Simulation-based evaluation of susceptibility distortion correction methods in diffusion MRI for connectivity analysis. - Oscar Esteban; Alessandro Daducci; Emmanuel Caruyer; Kieran O'Brien; María J. Ledesma-Carbayo; Meritxell Bach Cuadra; Andrés Santos (ISBI, 2014)

Sparse regularization for fiber ODF reconstruction: From the suboptimality of l2 and l1 priors to l0. - Alessandro Daducci; Dimitri Van De Ville; Jean-Philippe Thiran; Yves Wiaux (Medical Image Anal., 2014)

Quantitative Comparison of Reconstruction Methods for Intra-Voxel Fiber Recovery From Diffusion MRI. - Alessandro Daducci; Erick Jorge Canales-Rodríguez; Maxime Descoteaux; Eleftherios Garyfallidis; Yaniv Gur; Ying-Chia Lin; Merry Mani; Sylvain Merlet; Michael Paquette; Alonso Ramirez-Manzanares; Marco Reisert; Paulo Reis Rodrigues; et al. (IEEE Trans. Medical Imaging, 2014)

Structured sparsity through reweighting and application to diffusion MRI. - Anna Auría; Alessandro Daducci; Jean-Philippe Thiran; Yves Wiaux (EUSIPCO, 2015)

Accelerated microstructure imaging via convex optimisation for regions with multiple fibres (AMICOx). - Anna Auría; David Romascano; E. Canales-Rodriguen; Yves Wiaux; T. B. Dirby; Daniel C. Alexander; Jean-Philippe Thiran; Alessandro Daducci (ICIP, 2015)

Quantitative Analysis of Myelin and Axonal Remodeling in the Uninjured Motor Network After Stroke. - Ying-Chia Lin; Alessandro Daducci; Djalel Eddine Meskaldji; Jean-Philippe Thiran; Patrik Michel; Reto Meuli; Gunnar Krueger; Gloria Menegaz; Cristina Granziera (Brain Connect., 2015)

Structured sparsity for spatially coherent fibre orientation estimation in diffusion MRI. - Anna Auría; Alessandro Daducci; Jean-Philippe Thiran; Yves Wiaux (NeuroImage, 2015)

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data. - Alessandro Daducci; Erick Jorge Canales-Rodríguez; Hui Zhang 005; Tim B. Dyrby; Daniel C. Alexander; Jean-Philippe Thiran (NeuroImage, 2015)

COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography. - Alessandro Daducci; Alessandro Dal Palù; Alia Lemkaddem; Jean-Philippe Thiran (IEEE Trans. Medical Imaging, 2015)

Porting Matlab Applications to High-Performance C++ Codes: CPU/GPU-Accelerated Spherical Deconvolution of Diffusion MRI Data. - Javier García Blas; Manuel F. Dolz; José Daniel García; Jesús Carretero 001; Alessandro Daducci; Yasser Alemán-Gómez; Erick Jorge Canales-Rodríguez (ICA3PP, 2016)

Diffantom: Whole-Brain Diffusion MRI Phantoms Derived from Real Datasets of the Human Connectome Project. - Oscar Esteban; Emmanuel Caruyer; Alessandro Daducci; Meritxell Bach Cuadra; María J. Ledesma-Carbayo; Andrés Santos (Frontiers Neuroinformatics, 2016)

What lies beneath? Diffusion EAP-based study of brain tissue microstructure. - Mauro Zucchelli; Lorenza Brusini; Carlos Andres Mendez; Alessandro Daducci; Cristina Granziera; Gloria Menegaz (Medical Image Anal., 2016)

Surface-driven registration method for the structure-informed segmentation of diffusion MR images. - Oscar Esteban; Dominique Zosso; Alessandro Daducci; Meritxell Bach Cuadra; María J. Ledesma-Carbayo; Jean-Philippe Thiran; Andrés Santos (NeuroImage, 2016)

Transient networks of spatio-temporal connectivity map communication pathways in brain functional systems. - Alessandra Griffa; Benjamin Ricaud; Kirell Benzi; Xavier Bresson; Alessandro Daducci; Pierre Vandergheynst; Jean-Philippe Thiran; Patric Hagmann (NeuroImage, 2017)

Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. - Fidel Alfaro-Almagro; Mark Jenkinson; Neal K. Bangerter; Jesper L. R. Andersson; Ludovica Griffanti; Gwenaëlle Douaud; Stamatios N. Sotiropoulos; Saâd Jbabdi; Moisés Hernández-Fernández; Emmanuel Vallée; Diego Vidaurre; Matthew A. Webster; et al. (NeuroImage, 2018)

Surface-enhanced tractography (SET). - Etienne St-Onge; Alessandro Daducci; Gabriel Girard; Maxime Descoteaux (NeuroImage, 2018)

Learning Global Brain Microstructure Maps Using Trainable Sparse Encoders. - Jonathan Rafael-Patino; Muhamed Barakovic; Gabriel Girard; Alessandro Daducci; Jean-Philippe Thiran (ICIP, 2019)

Cuda Parallelization of Commit Framework for Efficient Microstructure-Informed Tractography. - Erick Hernandez-Gutierrez; Alonso Ramirez-Manzanares; José L. Marroquín; Mario Ocampo-Pineda; Alessandro Daducci (ISBI, 2019)

Sparse wars: A survey and comparative study of spherical deconvolution algorithms for diffusion MRI. - Erick Jorge Canales-Rodríguez; Jon Haitz Legarreta; Marco Pizzolato; Gaëtan Rensonnet; Gabriel Girard; Jonathan Rafael-Patino; Muhamed Barakovic; David Romascano; Yasser Alemán-Gómez; Joaquim Radua; Edith Pomarol-Clotet; Raymond Salvador; et al. (NeuroImage, 2019)

Limits to anatomical accuracy of diffusion tractography using modern approaches. - Kurt G. Schilling; Vishwesh Nath; Colin B. Hansen; Prasanna Parvathaneni; Justin A. Blaber; Yurui Gao; Peter Neher; Dogu Baran Aydogan; Yonggang Shi; Mario Ocampo-Pineda; Simona Schiavi; Alessandro Daducci; et al. (NeuroImage, 2019)

A 4D Basis and Sampling Scheme for the Tensor Encoded Multi-Dimensional Diffusion MRI Signal. - Alice P. Bates; Alessandro Daducci; Parastoo Sadeghi; Emmanuel Caruyer (IEEE Signal Process. Lett., 2020)

Higher Order Spherical Harmonics Reconstruction of Fetal Diffusion MRI With Intensity Correction. - Maria Deprez; Anthony Price; Daan Christiaens; Georgia Lockwood Estrin; Lucilio Cordero-Grande; Jana Hutter; Alessandro Daducci; Jacques-Donald Tournier; Mary A. Rutherford; Serena J. Counsell; Meritxell Bach Cuadra; Joseph V. Hajnal (IEEE Trans. Medical Imaging, 2020)

RF-Isolation: A Novel Representation of Structural Connectivity Networks for Multiple Sclerosis Classification. - Antonella Mensi; Simona Schiavi; Maria Petracca; Nicole Graziano; Alessandro Daducci; Matilde Inglese; Manuele Bicego (CIBB, 2021)

Enhancing Reliability Of Structural Brain Connectivity With Outlier Adjusted Tractogram Filtering. - Viljami Sairanen; Mario Ocampo-Pineda; Cristina Granziera; Simona Schiavi; Alessandro Daducci (ISBI, 2021)

Hierarchical Microstructure Informed Tractography. - Mario Ocampo-Pineda; Simona Schiavi; François Rheault; Gabriel Girard; Laurent Petit; Maxime Descoteaux; Alessandro Daducci (Brain Connect., 2021)

Fast Fiber Orientation Estimation in Diffusion MRI from kq-Space Sampling and Anatomical Priors. - Marica Pesce; Audrey Repetti; Anna Auría; Alessandro Daducci; Jean-Philippe Thiran; Yves Wiaux (J. Imaging, 2021)

Comparison of non-parametric T2 relaxometry methods for myelin water quantification. - Erick Jorge Canales-Rodríguez; Marco Pizzolato; Gian Franco Piredda; Tom Hilbert; Nicolas Kunz; Caroline Pot; Thomas Yu; Raymond Salvador; Edith Pomarol-Clotet; Tobias Kober; Jean-Philippe Thiran; Alessandro Daducci (Medical Image Anal., 2021)

Resolving bundle-specific intra-axonal T2 values within a voxel using diffusion-relaxation tract-based estimation. - Muhamed Barakovic; Chantal M. W. Tax; Umesh S. Rudrapatna; Maxime Chamberland; Jonathan Rafael-Patino; Cristina Granziera; Jean-Philippe Thiran; Alessandro Daducci; Erick Jorge Canales-Rodríguez; Derek K. Jones (NeuroImage, 2021)

Comparison of diffusion MRI and CLARITY fiber orientation estimates in both gray and white matter regions of human and primate brain. - Christoph Leuze; Maged Goubran; Muhamed Barakovic; Markus Aswendt; Qiyuan Tian; Brian Hsueh; A. Crow; E. M. M. Weber; Gary Steinberg; Michael Zeineh; E. D. Plowey; Alessandro Daducci; et al. (NeuroImage, 2021)

Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? - Kurt G. Schilling; François Rheault; Laurent Petit; Colin B. Hansen; Vishwesh Nath; Fang-Cheng Yeh; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Elda Fischi Gomez; Marco Pizzolato; et al. (NeuroImage, 2021)

Microstructure-Weighted Connectomics in Multiple Sclerosis. - Sara Bosticardo; Simona Schiavi; Sabine Schaedelin; Po-Jui Lu; Muhamed Barakovic; Matthias Weigel; Ludwig Kappos; Jens Kuhle; Alessandro Daducci; Cristina Granziera (Brain Connect., 2022)

Bundle-o-graphy: improving structural connectivity estimation with adaptive microstructure-informed tractography. - Matteo Battocchio; Simona Schiavi; Maxime Descoteaux; Alessandro Daducci (NeuroImage, 2022)

Evaluating reproducibility and subject-specificity of microstructure-informed connectivity. - Philipp J. Koch; Gabriel Girard; Julia Brügger; Andéol Cadic-Melchior; Elena Beanato; Chang-Hyun Park; Takuya Morishita; Maximilian Jonas Wessel; Marco Pizzolato; Erick Jorge Canales-Rodríguez; Elda Fischi Gomez; Simona Schiavi; et al. (NeuroImage, 2022)

Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. - Chiara Maffei; Gabriel Girard; Kurt G. Schilling; Dogu Baran Aydogan; Nagesh Adluru; Andrey Zhylka; Ye Wu 001; Matteo Mancini; Andac Hamamci; Alessia Sarica; Achille Teillac; Steven H. Baete; et al. (NeuroImage, 2022)

Incorporating outlier information into diffusion-weighted MRI modeling for robust microstructural imaging and structural brain connectivity analyses. - Viljami Sairanen; Mario Ocampo-Pineda; Cristina Granziera; Simona Schiavi; Alessandro Daducci (NeuroImage, 2022)

Bundle myelin fraction (BMF) mapping of different white matter connections using microstructure informed tractography. - Simona Schiavi; Po-Jui Lu; Matthias Weigel; Antoine Lutti; Derek K. Jones; Ludwig Kappos; Cristina Granziera; Alessandro Daducci (NeuroImage, 2022)

Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review. - Fan Zhang 013; Alessandro Daducci; Yong He; Simona Schiavi; Caio Seguin; Robert E. Smith 002; Chun-Hung Yeh; Tengda Zhao; Lauren J. O'Donnell (NeuroImage, 2022)

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. - Gabriel Girard; Jonathan Rafael-Patino; Raphaël Truffet; Dogu Baran Aydogan; Nagesh Adluru; Veena A. Nair; Vivek Prabhakaran; Barbara B. Bendlin; Andrew L. Alexander; Sara Bosticardo; Ilaria Gabusi; Mario Ocampo-Pineda; et al. (NeuroImage, 2023)

Evaluation of tractogram filtering methods using human-like connectome phantoms. - Tabinda Sarwar; Kotagiri Ramamohanarao; Alessandro Daducci; Simona Schiavi; Robert E. Smith 002; Andrew Zalesky (NeuroImage, 2023)

Blurred streamlines: A novel representation to reduce redundancy in tractography. - Ilaria Gabusi; Matteo Battocchio; Sara Bosticardo; Simona Schiavi; Alessandro Daducci (Medical Image Anal., 2024)