PromoterPlot: a graphical display of promoter similarities by pattern recognition. - Alessandro Di Cara; Karsten Schmidt 001; Brian A. Hemmings; Edward J. Oakeley (Nucleic Acids Res., 2005)

Dynamic simulation of regulatory networks using SQUAD. - Alessandro Di Cara; Abhishek Garg; Giovanni De Micheli; Ioannis Xenarios; Luis Mendoza (BMC Bioinform., 2007)

Synchronous versus asynchronous modeling of gene regulatory networks. - Abhishek Garg; Alessandro Di Cara; Ioannis Xenarios; Luis Mendoza; Giovanni De Micheli (Bioinform., 2008)

Modeling stochasticity and robustness in gene regulatory networks. - Abhishek Garg; Kartik Mohanram; Alessandro Di Cara; Giovanni De Micheli; Ioannis Xenarios (Bioinform., 2009)