A Markovian formalization of heart rate dynamics evinces a quantum-like hypothesis. - Alessandro Giuliani 002; Pietro Lo Giudice; Anna Maria Mancini; Gianni Quatrini; Licia Pacifici; Charles L. Webber; Michail Zak; Joseph P. Zbilut (Biol. Cybern., 1996)

Orthographic Structuring of Human Speech and Texts: Linguistic Application of Recurrence Quantification Analysis - Franco F. Orsucci; Kimberly Walter; Alessandro Giuliani 002; Charles L. Webber Jr.; Joseph P. Zbilut (CoRR, 1997)

The relevance of physical and mathematical modes of thought on complex systems behavior in biological systems. - Alessandro Giuliani 002; Joseph P. Zbilut (Complex., 1998)

On the Equivalence Between Different Descriptions of Molecules: Value for Computational Approaches. - Romualdo Benigni; Grazia Gallo; Fabrizio Giorgi; Alessandro Giuliani 002 (J. Chem. Inf. Comput. Sci., 1999)

Infrared Spectra Information and Their Correlation with QSAR Descriptors. - Romualdo Benigni; Laura Passerini; David J. Livingstone; Mark A. Johnson; Alessandro Giuliani 002 (J. Chem. Inf. Comput. Sci., 1999)

Principal Component Analysis for Descriptive Epidemiology. - Alessandro Giuliani 002; Romualdo Benigni (ISMDA, 2000)

Infrared Spectra as Chemical Descriptors for QSAR Models. - Romualdo Benigni; Alessandro Giuliani 002; Laura Passerini (J. Chem. Inf. Comput. Sci., 2001)

Invariant and Subject-Dependent Features of Otoacoustic Emissions. - Giovanna Zimatore; Alessandro Giuliani 002; Stavros Hatzopoulos; Alessandro Martini; Alfredo Colosimo (ISMDA, 2002)

Putting the Predictive Toxicology Challenge Into Perspective: Reflections on the Results. - Romualdo Benigni; Alessandro Giuliani 002 (Bioinform., 2003)

Looking for an Unambiguous Geometrical Definition of Organic Series from 3-D Molecular Similarity Indices. - Marina Cotta-Ramusino; Romualdo Benigni; Laura Passerini; Alessandro Giuliani 002 (J. Chem. Inf. Comput. Sci., 2003)

Structure-Related Statistical Singularities along Protein Sequences: A Correlation Study. - Mauro Colafranceschi; Alfredo Colosimo; Joseph P. Zbilut; Vladimir N. Uversky; Alessandro Giuliani 002 (J. Chem. Inf. Model., 2005)

Metabolic pathways variability and sequence/networks comparisons. - Kyaw Tun; Pawan K. Dhar; Maria Concetta Palumbo; Alessandro Giuliani 002 (BMC Bioinform., 2006)

Model-free analysis of brain fMRI data by recurrence quantification. - Marta Bianciardi; Paolo Sirabella; Gisela E. Hagberg; Alessandro Giuliani 002; Joseph P. Zbilut; Alfredo Colosimo (NeuroImage, 2007)

PROFALIGN Algorithm Identifies the Regions Containing Folding Determinants by Scoring Pairs of Hydrophobic Profiles of Remotely Related Proteins. - Olga Tcheremenskaia; Alessandro Giuliani 002; Maurizio Tomasi (J. Comput. Biol., 2008)

Biological uncertainty. - Joseph P. Zbilut; Alessandro Giuliani 002 (Theory Biosci., 2008)

Hematopoietic differentiation: a coordinated dynamical process towards attractor stable states. - Nadia Felli; Luciano Cianetti; Elvira Pelosi; Alessandra Carè; Chang Liu; George A. Calin; Simona Rossi; Cesare Peschle; Giovanna Marziali; Alessandro Giuliani 002 (BMC Syst. Biol., 2010)

Application of Recurrence Quantification Analysis (RQA) in Biosequence Pattern Recognition. - Saritha Namboodiri; Chandra Verma; Pawan K. Dhar; Alessandro Giuliani 002; Achuthsankar S. Nair (ACC (1), 2011)

Systems biology reveals biology of systems. - Marta Bertolaso; Alessandro Giuliani 002; Laura De Gara (Complex., 2011)

A Multiscale Graph Theoretical Approach to Gene Regulation Networks: A Case Study in Atrial Fibrillation. - Federica Censi; Alessandro Giuliani 002; Pietro Bartolini; Giovanni Calcagnini (IEEE Trans. Biomed. Eng., 2011)

Sym-Bio GUI: A graphical user interface to analyze protein aminoacid residue contact networks. - Alessandro Giuliani 002; Luisa Di Paola; Valentina Russo (CBMS, 2012)

Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles. - Luisa Di Paola; Paola Paci; Daniele Santoni; Micol De Ruvo; Alessandro Giuliani 002 (J. Chem. Inf. Model., 2012)

A dissimilarity-based classifier for generalized sequences by a granular computing approach. - Antonello Rizzi; Francesca Possemato; Lorenzo Livi; Azzurra Sebastiani; Alessandro Giuliani 002; Fabio Massimo Frattale Mascioli (IJCNN, 2013)

Assessing protein resilience via a complex network approach. - Gabriele Oliva; Luisa Di Paola; Alessandro Giuliani 002; Federica Pascucci; Roberto Setola (NSW, 2013)

Gene Regulation Networks in Early Phase of Duchenne Muscular Dystrophy. - Camilla Bernardini; Federica Censi; Wanda Lattanzi; Giovanni Calcagnini; Alessandro Giuliani 002 (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Characterization of Graphs for Protein Structure Modeling and Recognition of Solubility. - Lorenzo Livi; Alessandro Giuliani 002; Alireza Sadeghian (CoRR, 2014)

Modules Identification in Protein Structures: The Topological and Geometrical Solutions. - Setareh Tasdighian; Luisa Di Paola; Micol De Ruvo; Paola Paci; Daniele Santoni; Pasquale Palumbo; Giampiero Mei; Almerinda Di Venere; Alessandro Giuliani 002 (J. Chem. Inf. Model., 2014)

Correction to Modules Identification in Protein Structures: The Topological and Geometrical Solutions. - Setareh Tasdighian; Luisa Di Paola; Micol De Ruvo; Paola Paci; Daniele Santoni; Pasquale Palumbo; Giampiero Mei; Almerinda Di Venere; Alessandro Giuliani 002 (J. Chem. Inf. Model., 2014)

Networks as a Privileged Way to Develop Mesoscopic Level Approaches in Systems Biology. - Alessandro Giuliani 002 (Syst., 2014)

Organization principles of biological networks: An explorative study. - Havva Kohestani; Alessandro Giuliani 002 (Biosyst., 2016)

Toward a multilevel representation of protein molecules: Comparative approaches to the aggregation/folding propensity problem. - Lorenzo Livi; Alessandro Giuliani 002; Antonello Rizzi (Inf. Sci., 2016)

Predicting the transition from normal aging to Alzheimer's disease: A statistical mechanistic evaluation of FDG-PET data. - Marco Pagani; Alessandro Giuliani 002; Johanna Öberg; Andrea Chincarini; Silvia Morbelli; Andrea Brugnolo; Dario Arnaldi; Agnese Picco; Matteo Bauckneht; Ambra Buschiazzo; Gianmario Sambuceti; Flavio Nobili (NeuroImage, 2016)

Supervised Approaches for Function Prediction of Proteins Contact Networks from Topological Structure Information. - Alessio Martino; Enrico Maiorino; Alessandro Giuliani 002; Mauro Giampieri; Antonello Rizzi (SCIA (1), 2017)

Single-Cell Reprogramming in Mouse Embryo Development through a Critical Transition State. - Masa Tsuchiya; Alessandro Giuliani 002; Kenichi Yoshikawa (Entropy, 2017)

Microcalcification morphological descriptors and parenchyma fractal dimension hierarchically interact in breast cancer: A diagnostic perspective. - Garima Verma; Maria Laura Luciani; Alessandro Palombo; Linda Metaxa; Giovanna Panzironi; Federica Pediconi; Alessandro Giuliani 002; Mariano Bizzarri; Virginia Todde (Comput. Biol. Medicine, 2018)

Self-Organization of Genome Expression from Embryo to Terminal Cell Fate: Single-Cell Statistical Mechanics of Biological Regulation. - Alessandro Giuliani 002; Masa Tsuchiya; Kenichi Yoshikawa (Entropy, 2018)

(Hyper)Graph Embedding and Classification via Simplicial Complexes. - Alessio Martino; Alessandro Giuliani 002; Antonello Rizzi (Algorithms, 2019)

What Differentiates Poor and Good Outcome Psychotherapy? A Statistical-Mechanics-Inspired Approach to Psychotherapy Research. - Giulio de Felice; Franco F. Orsucci; Andrea Scozzari; Omar Gelo; Gabriele Serafini; Silvia Andreassi; Nicoletta Vegni; Giulia Paoloni; Gloria Lagetto; Erhard Mergenthaler; Alessandro Giuliani 002 (Syst., 2019)

Metabolic networks classification and knowledge discovery by information granulation. - Alessio Martino; Alessandro Giuliani 002; Virginia Todde; Mariano Bizzarri; Antonello Rizzi (Comput. Biol. Chem., 2020)

Complexity in Biological Organization: Deconstruction (and Subsequent Restating) of Key Concepts. - Mariano Bizzarri; Oleg B. Naimark; José Nieto-Villar; Valeria Fedeli; Alessandro Giuliani 002 (Entropy, 2020)

Modelling and Recognition of Protein Contact Networks by Multiple Kernel Learning and Dissimilarity Representations. - Alessio Martino; Enrico De Santis; Alessandro Giuliani 002; Antonello Rizzi (Entropy, 2020)

Network Dynamics in Elemental Assimilation and Metabolism. - Austen Curtin; Christine Austin; Alessandro Giuliani 002; Manuel Ruiz Marín 001; Francheska Merced-Nieves; Martha M. Téllez-Rojo; Robert O. Wright; Manish Arora; Paul Curtin (Entropy, 2021)

PCN-Miner: an open-source extensible tool for the analysis of Protein Contact Networks. - Pietro Hiram Guzzi; Luisa Di Paola; Alessandro Giuliani 002; Pierangelo Veltri (Bioinform., 2022)

Design and Development of PCN-Miner: A tool for the Analysis of Protein Contact Networks. - Pietro Hiram Guzzi; Luisa Di Paola; Alessandro Giuliani 002; Pierangelo Veltri (CoRR, 2022)

A Statistical Journey through the Topological Determinants of the β2 Adrenergic Receptor Dynamics. - Luisa Di Paola; Humanath Poudel; Mauro Parise; Alessandro Giuliani 002; David M. Leitner (Entropy, 2022)

Reconstruction of the Temporal Correlation Network of All-Cause Mortality Fluctuation across Italian Regions: The Importance of Temperature and Among-Nodes Flux. - Guido Gigante; Alessandro Giuliani 002 (Entropy, 2023)

Decision Making in Networks: A Model of Awareness Raising. - Federico Bizzarri; Alessandro Giuliani 002; Chiara Mocenni (Inf., 2023)

System Science Can Relax the Tension Between Data and Theory. - Alessandro Giuliani 002 (Syst., 2024)

Detecting Very Weak Signals: A Mixed Strategy to Deal with Biologically Relevant Information. - Alessandro Vici; Ann Zeuner; Alessandro Giuliani 002 (Algorithms, 2025)

Urban Systems Between the Environment, Human Health and Society: An Overview. - Carlo Modonesi; Stefano Serafini; Alessandro Giuliani 002 (Syst., 2025)

Intelligence of Matter: Rise of a New Style of Doing Science and Scientific Thinking? - Timir Tripathi; Vladimir N. Uversky; Alessandro Giuliani 002 (Syst., 2025)