TargetFinder: searching annotated sequence databases for target genes of transcription factors. - Giovanni Lavorgna; Alessandro Guffanti; G. Borsani; Andrea Ballabio; E. Boncinelli (Bioinform., 1999)

AntiHunter: searching BLAST output for EST antisense transcripts. - Giovanni Lavorgna; Luca Sessa; Alessandro Guffanti; Lelio Lassandro; Giorgio Casari (Bioinform., 2004)

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. - Manuela Helmer-Citterich; Rita Casadio; Alessandro Guffanti; Giancarlo Mauri; Luciano Milanesi; Graziano Pesole; Giorgio Valle; Cecilia Saccone (BMC Bioinform., 2005)

NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae. - Davide Rambaldi; Alessandro Guffanti; Paolo Morandi; Giuseppe Cassata (BMC Bioinform., 2005)

DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes. - Angelo Boccia; Mauro Petrillo; Diego di Bernardo; Alessandro Guffanti; Flavio Mignone; Stefano Confalonieri; Lucilla Luzi; Graziano Pesole; Giovanni Paolella; Andrea Ballabio; Sandro Banfi (Nucleic Acids Res., 2005)

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data. - Davide Rambaldi; Barbara Felice; Viviane Praz; Philipp Bucher; Davide Cittaro; Alessandro Guffanti (BMC Bioinform., 2007)

An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes. - Giulia Soldà; Igor V. Makunin; Osman Ugur Sezerman; Alberto Corradin; Giorgio Corti; Alessandro Guffanti (Briefings Bioinform., 2009)

RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes. - Ivan Merelli; Alessandro Guffanti; Marco Fabbri; Andrea Cocito; Laura Furia; Ursula Grazini; Raoul Jean Pierre Bonnal; Luciano Milanesi; Fraser McBlane (Nucleic Acids Res., 2010)

Parallelization of the SSAKE Genomics Application. - Daniele D'Agostino; Ivan Merelli; René L. Warren; Alessandro Guffanti; Luciano Milanesi; Andrea Clematis (PDP, 2011)

A CUDA-based Implementation of the SSAKE Genomics Application. - Daniele D'Agostino; Andrea Clematis; Alessandro Guffanti; Luciano Milanesi; Ivan Merelli (PDP, 2012)

Long Non-Coding RNA and Alternative Splicing Modulations in Parkinson's Leukocytes Identified by RNA Sequencing. - Lilach Soreq; Alessandro Guffanti; Nathan Salomonis; Alon Simchovitz; Zvi Israel; Hagai Bergman; Hermona Soreq (PLoS Comput. Biol., 2014)

Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics. - Angelo M. Facchiano; Claudia Angelini; Roberta Bosotti; Alessandro Guffanti; Anna Marabotti; Roberto Marangoni; Stefano Pascarella; Paolo Romano 001; Andreas Zanzoni; Manuela Helmer-Citterich (BMC Bioinform., 2015)

BITS 2015: the annual meeting of the Italian Society of Bioinformatics. - Luciano Milanesi; Alessandro Guffanti; Giancarlo Mauri; Marco Masseroli (BMC Bioinform., 2016)