Ontology-Driven Co-clustering of Gene Expression Data. - Francesca Cordero; Ruggero G. Pensa; Alessia Visconti; Dino Ienco; Marco Botta (AI*IA, 2009)

A new protein motif extraction framework based on constrained co-clustering. - Francesca Cordero; Alessia Visconti; Marco Botta (SAC, 2009)

Gene Ontology Rewritten for Computing Gene Functional Similarity. - Alessia Visconti; Francesca Cordero; Marco Botta; Raffaele A. Calogero (CISIS, 2010)

Tackling the DREAM Challenge for Gene Regulatory Networks Reverse Engineering. - Alessia Visconti; Roberto Esposito; Francesca Cordero (AI*IA, 2011)

Restructuring the Gene Ontology to emphasise regulative pathways and to improve gene similarity queries. - Alessia Visconti; Roberto Esposito; Francesca Cordero (Int. J. Comput. Biol. Drug Des., 2011)

A Modular Database Architecture Enabled to Comparative Sequence Analysis. - Paola Bonfante; Francesca Cordero; Stefano Ghignone; Dino Ienco; Luisa Lanfranco; Giorgio Leonardi; Rosa Meo; Stefania Montani; Luca Roversi; Alessia Visconti (Trans. Large Scale Data Knowl. Centered Syst., 2011)

CDoT: Optimizing MAP Queries on Trees. - Roberto Esposito; Daniele Paolo Radicioni; Alessia Visconti (AI*IA, 2013)

Leveraging additional knowledge to support coherent bicluster discovery in gene expression data. - Alessia Visconti; Francesca Cordero; Ruggero G. Pensa (Intell. Data Anal., 2014)

Prediction and interpretation of the lipophilicity of small peptides. - Alessia Visconti; Giuseppe Ermondi; Giulia Caron; Roberto Esposito (J. Comput. Aided Mol. Des., 2015)

Accessible Data Curation and Analytics for International-Scale Citizen Science Datasets. - Benjamin Murray; Eric Kerfoot; Mark S. Graham; Carole H. Sudre; Erika Molteni; Liane S. Canas; Michela Antonelli; Alessia Visconti; Andrew T. Chan; Paul W. Franks; Richard Davies; Jonathan Wolf; et al. (CoRR, 2020)

PHeP: TrustAlert Open-Source Platform for Enhancing Predictive Healthcare with Deep Learning. - Sandro Gepiro Contaldo; Emanuele Pietropaolo; Lorenzo Bosio; Simone Pernice; Irene Terrone; Daniele Baccega; Yuting Wang; Rahul Kumar Sahoo; Giuseppe Rizzo 002; Alessia Visconti; Paola Berchialla; Marco Beccuti (CIBB, 2024)

Discovering and exploring the hidden diversity of the human gut viruses using highly enriched virome samples. - Moreno Zolfo; Andrea Silverj; Aitor Blanco-Míguez; Paolo Manghi; Omar Rota Stabelli; Vitor Heidrich; Jordan Jensen; Sagun Maharjan; Eric A. Franzosa; Cristina Menni; Alessia Visconti; Federica Pinto; et al. (Zenodo, 2024)