Data-Driven High-Throughput Prediction of the 3-D Structure of Small Molecules: Review and Progress. - Alessio Andronico; Arlo Z. Randall; Ryan W. Benz; Pierre Baldi (J. Chem. Inf. Model., 2011)

ReactionMap: An Efficient Atom-Mapping Algorithm for Chemical Reactions. - David Fooshee; Alessio Andronico; Pierre Baldi (J. Chem. Inf. Model., 2013)

Integrating information from historical data into mechanistic models for influenza forecasting. - Alessio Andronico; Juliette Paireau; Simon Cauchemez (PLoS Comput. Biol., 2024)