A Combination of Support Vector Machines and Bidirectional Recurrent Neural Networks for Protein Secondary Structure Prediction. - Alessio Ceroni; Paolo Frasconi; Andrea Passerini; Alessandro Vullo (AI*IA, 2003)

Predicting the Disulfide Bonding State of Cysteines with Combinations of Kernel Machines. - Alessio Ceroni; Paolo Frasconi; Andrea Passerini; Alessandro Vullo (J. VLSI Signal Process., 2003)

On the role of long-range dependencies in learning protein secondary structure. - Alessio Ceroni; Paolo Frasconi (IJCNN, 2004)

Protein Structure Assembly from Knowledge of β -Sheet Motifs and Secondary Structure. - Alessio Ceroni; Paolo Frasconi; Alessandro Vullo (WIRN, 2004)

Learning protein secondary structure from sequential and relational data. - Alessio Ceroni; Paolo Frasconi; Gianluca Pollastri (Neural Networks, 2005)

Decomposition Kernels for Natural Language Processing. - Fabrizio Costa; Sauro Menchetti; Alessio Ceroni; Andrea Passerini; Paolo Frasconi (Learning Structured Information@EACL, 2006)

DISULFIND: a disulfide bonding state and cysteine connectivity prediction server. - Alessio Ceroni; Andrea Passerini; Alessandro Vullo; Paolo Frasconi (Nucleic Acids Res., 2006)

Prediction of structure and function of proteins and ligands by means of neural and kernel methods for structured data. - Alessio Ceroni (2006)

Classification of small molecules by two- and three-dimensional decomposition kernels. - Alessio Ceroni; Fabrizio Costa; Paolo Frasconi (Bioinform., 2007)

The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures. - Alessio Ceroni; Anne Dell; Stuart M. Haslam (Source Code Biol. Medicine, 2007)