Aging Chart: a community resource for rapid exploratory pathway analysis of age-related processes. - Alexey Moskalev; Svetlana Zhikrivetskaya; Mikhail Shaposhnikov; Evgenia Dobrovolskaya; Roman Gurinovich; Oleg Kuryan; Aleksandr Pashuk; Leslie C. Jellen; Alex Aliper; Alex Peregudov; Alex Zhavoronkov (Nucleic Acids Res., 2016)

Chemistry42: An AI-based platform for de novo molecular design. - Yan A. Ivanenkov; Alexander Zhebrak; Dmitry Bezrukov; Bogdan Zagribelnyy; Vladimir Aladinskiy; Daniil Polykovskiy; Evgeny Putin; Petrina Kamya; Alexander Aliper; Alex Zhavoronkov (CoRR, 2021)

COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity. - Vladimir Naumov; Evgeny Putin; Stefan Pushkov; Ekaterina Kozlova; Konstantin Romantsov; Alexander A. Kalashnikov; Fedor Galkin; Nina Tihonova; Anastasia Shneyderman; Egor Galkin; Arsenii Zinkevich; Stephanie M. Cope; et al. (PLoS Comput. Biol., 2021)

AlphaFold Accelerates Artificial Intelligence Powered Drug Discovery: Efficient Discovery of a Novel Cyclin-dependent Kinase 20 (CDK20) Small Molecule Inhibitor. - Feng Ren; Xiao Ding; Min Zheng; Mikhail Korzinkin; Xin Cai; Wei Zhu; Alexey Mantsyzov; Alex Aliper; Vladimir Aladinskiy; Zhongying Cao; Shanshan Kong; Xi Long; et al. (CoRR, 2022)

nach0: Multimodal Natural and Chemical Languages Foundation Model. - Micha Livne; Zulfat Miftahutdinov; Elena Tutubalina; Maksim Kuznetsov; Daniil Polykovskiy; Annika Brundyn; Aastha Jhunjhunwala; Anthony Costa; Alex Aliper; Alex Zhavoronkov (CoRR, 2023)

Chemistry42: An AI-Driven Platform for Molecular Design and Optimization. - Yan A. Ivanenkov; Daniil Polykovskiy; Dmitry Bezrukov; Bogdan Zagribelnyy; Vladimir Aladinskiy; Petrina Kamya; Alex Aliper; Feng Ren; Alex Zhavoronkov (J. Chem. Inf. Model., 2023)

Exploring the Advantages of Quantum Generative Adversarial Networks in Generative Chemistry. - Po-Yu Kao; Ya-Chu Yang; Wei-Yin Chiang; Jen-Yueh Hsiao; Yudong Cao; Alex Aliper; Feng Ren; Alán Aspuru-Guzik; Alex Zhavoronkov; Min-Hsiu Hsieh; Yen-Chu Lin (J. Chem. Inf. Model., 2023)

Quantum Computing-Enhanced Algorithm Unveils Novel Inhibitors for KRAS. - Mohammad Ghazi Vakili; Christoph Gorgulla; AkshatKumar Nigam; Dmitry Bezrukov; Daniel Varoli; Alex Aliper; Daniil Polykovskiy; Krishna M. Padmanabha Das; Jamie Snider; Anna Lyakisheva; Ardalan Hosseini Mansob; Zhong Yao; et al. (CoRR, 2024)

PandaOmics: An AI-Driven Platform for Therapeutic Target and Biomarker Discovery. - Petrina Kamya; Ivan V. Ozerov; Frank W. Pun; Kyle Tretina; Tatyana Fokina; Shan Chen; Vladimir Naumov; Xi Long; Sha Lin; Mikhail Korzinkin; Daniil Polykovskiy; Alex Aliper; et al. (J. Chem. Inf. Model., 2024)

COSMIC: Molecular Conformation Space Modeling in Internal Coordinates with an Adversarial Framework. - Maksim Kuznetsov; Fedor Ryabov; Roman Schutski; Rim Shayakhmetov; Yen-Chu Lin; Alex Aliper; Daniil Polykovskiy (J. Chem. Inf. Model., 2024)

AttenhERG: a reliable and interpretable graph neural network framework for predicting hERG channel blockers. - Tianbiao Yang; Xiaoyu Ding; Elizabeth McMichael; Frank W. Pun; Alex Aliper; Feng Ren; Alex Zhavoronkov; Xiao Ding (J. Cheminformatics, 2024)

nach0-pc: Multi-task Language Model with Molecular Point Cloud Encoder. - Maksim Kuznetsov; Airat Valiev; Alex Aliper; Daniil Polykovskiy; Elena Tutubalina; Rim Shayakhmetov; Zulfat Miftahutdinov (AAAI, 2025)