Pfam: multiple sequence alignments and HMM-profiles of protein domains. - Erik L. L. Sonnhammer; Sean R. Eddy; Ewan Birney; Alex Bateman; Richard Durbin (Nucleic Acids Res., 1998)

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. - Alex Bateman; Ewan Birney; Richard Durbin; Sean R. Eddy; Robert D. Finn; Erik L. L. Sonnhammer (Nucleic Acids Res., 1999)

InterPro-an integrated documentation resource for protein families, domains and functional sites. - Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; Florence Corpet; Michael D. R. Croning; Richard Durbin; Laurent Falquet; et al. (Bioinform., 2000)

The Pfam Protein Families Database. - Alex Bateman; Ewan Birney; Richard Durbin; Sean R. Eddy; Kevin L. Howe; Erik L. L. Sonnhammer (Nucleic Acids Res., 2000)

HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. - Paul I. W. de Bakker; Alex Bateman; David F. Burke; Ricardo Núñez Miguel; Kenji Mizuguchi; Jiye Shi; Hiroki Shirai; Tom L. Blundell (Bioinform., 2001)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites. - Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; Florence Corpet; Michael D. R. Croning; Richard Durbin; Laurent Falquet; et al. (Nucleic Acids Res., 2001)

HMM-based databases in InterPro. - Alex Bateman; Daniel H. Haft (Briefings Bioinform., 2002)

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; Emmanuel Courcelle; et al. (Briefings Bioinform., 2002)

The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. - Sam Griffiths-Jones; Alex Bateman (Bioinform., 2002)

QuickTree: building huge Neighbour-Joining trees of protein sequences. - Kevin L. Howe; Alex Bateman; Richard Durbin (Bioinform., 2002)

The SGS3 protein involved in PTGS finds a family. - Alex Bateman (BMC Bioinform., 2002)

The Pfam Protein Families Database. - Alex Bateman; Ewan Birney; Lorenzo Cerutti; Richard Durbin; Laurence Ettwiller; Sean R. Eddy; Sam Griffiths-Jones; Kevin L. Howe; Mhairi Marshall; Erik L. L. Sonnhammer (Nucleic Acids Res., 2002)

The TROVE module: A common element in Telomerase, Ro and Vault ribonucleoproteins. - Alex Bateman; Valerie A. Kickhoefer (BMC Bioinform., 2003)

A comparison of Pfam and MEROPS: Two databases, one comprehensive, and one specialised. - David J. Studholme; Neil D. Rawlings; Alan J. Barrett; Alex Bateman (BMC Bioinform., 2003)

Rfam: an RNA family database. - Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R. Eddy (Nucleic Acids Res., 2003)

The InterPro Database, 2003 brings increased coverage and new features. - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Daniel Barrell; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; et al. (Nucleic Acids Res., 2003)

New Leadership for Bioinformatics. - Alex Bateman; Alfonso Valencia (Bioinform., 2004)

Enhanced protein domain discovery using taxonomy. - Lachlan James M. Coin; Alex Bateman; Richard Durbin (BMC Bioinform., 2004)

The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases. - Shane C. Dillon; Alex Bateman (BMC Bioinform., 2004)

The Pfam protein families database. - Alex Bateman; Lachlan James M. Coin; Richard Durbin; Robert D. Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L. L. Sonnhammer; David J. Studholme; Corin Yeats; et al. (Nucleic Acids Res., 2004)

The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation. - Alex Bateman; Matthew T. G. Holden; Corin Yeats (Bioinform., 2005)

An update from the Bioinformatics Editors. - Alex Bateman; Alfonso Valencia (Bioinform., 2005)

iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions. - Robert D. Finn; Mhairi Marshall; Alex Bateman (Bioinform., 2005)

Visualizing profile-profile alignment: pairwise HMM logos. - Benjamin Schuster-Böckler; Alex Bateman (Bioinform., 2005)

Increasing the Impact of Bioinformatics. - Alfonso Valencia; Alex Bateman (Bioinform., 2005)

Rfam: annotating non-coding RNAs in complete genomes. - Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R. Eddy; Alex Bateman (Nucleic Acids Res., 2005)

InterPro, progress and status in 2005. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Paul Bradley; Peer Bork; Phillip Bucher; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; et al. (Nucleic Acids Res., 2005)

Bioinformatics - The new home for protein sequence motifs. - Alex Bateman (Bioinform., 2006)

Structural genomics meets computational biology. - Alex Bateman; Alfonso Valencia (Bioinform., 2006)

Software patents in Bioinformatics. - Alfonso Valencia; Alex Bateman (Bioinform., 2006)

EDITORIAL. - Alex Bateman (Nucleic Acids Res., 2006)

Pfam: clans, web tools and services. - Robert D. Finn; Jaina Mistry; Benjamin Schuster-Böckler; Sam Griffiths-Jones; Volker Hollich; Timo Lassmann; Simon Moxon; Mhairi Marshall; Ajay Khanna; Richard Durbin; Sean R. Eddy; Erik L. L. Sonnhammer; et al. (Nucleic Acids Res., 2006)

miRBase: microRNA sequences, targets and gene nomenclature. - Sam Griffiths-Jones; Russell J. Grocock; Stijn van Dongen; Alex Bateman; Anton J. Enright (Nucleic Acids Res., 2006)

SCOOP: a simple method for identification of novel protein superfamily relationships. - Alex Bateman; Robert D. Finn (Bioinform., 2007)

Editorial. - Alfonso Valencia; Alex Bateman (Bioinform., 2007)

Predicting active site residue annotations in the Pfam database. - Jaina Mistry; Alex Bateman; Robert D. Finn (BMC Bioinform., 2007)

Reuse of structural domain-domain interactions in protein networks. - Benjamin Schuster-Böckler; Alex Bateman (BMC Bioinform., 2007)

New developments in the InterPro database. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Virginie Buillard; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; Ujjwal Das; et al. (Nucleic Acids Res., 2007)

Pfam 10 years on: 10 000 families and still growing. - Stephen John Sammut; Robert D. Finn; Alex Bateman (Briefings Bioinform., 2008)

Databases, data tombs and dust in the wind. - Jonathan D. Wren; Alex Bateman (Bioinform., 2008)

The Pfam protein families database. - Robert D. Finn; John G. Tate; Jaina Mistry; Penny C. Coggill; Stephen John Sammut; Hans-Rudolf Hotz; Goran Ceric; Kristoffer Forslund; Sean R. Eddy; Erik L. L. Sonnhammer; Alex Bateman (Nucleic Acids Res., 2008)

Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. - Alex Bateman; Robert D. Finn; Peter J. Sims; Therese Wiedmer; Andreas Biegert; Johannes Söding (Bioinform., 2009)

Editorial. - Alex Bateman; John Quackenbush (Bioinform., 2009)

Cloud computing. - Alex Bateman; Matt Wood (Bioinform., 2009)

Rfam: updates to the RNA families database. - Paul P. Gardner; Jennifer Daub; John G. Tate; Eric P. Nawrocki; Diana L. Kolbe; Stinus Lindgreen; Adam C. Wilkinson; Robert D. Finn; Sam Griffiths-Jones; Sean R. Eddy; Alex Bateman (Nucleic Acids Res., 2009)

InterPro: the integrative protein signature database. - Sarah Hunter; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Ujjwal Das; Louise C. Daugherty; Lauranne Duquenne; Robert D. Finn; Julian Gough; et al. (Nucleic Acids Res., 2009)

Ten Simple Rules for Chairing a Scientific Session. - Alex Bateman; Philip E. Bourne (PLoS Comput. Biol., 2009)

Curators of the world unite: the International Society of Biocuration. - Alex Bateman (Bioinform., 2010)

The Pfam protein families database. - Robert D. Finn; Jaina Mistry; John G. Tate; Penny C. Coggill; Andreas Heger; Joanne E. Pollington; O. Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L. L. Sonnhammer; et al. (Nucleic Acids Res., 2010)

MEROPS: the peptidase database. - Neil D. Rawlings; Alan J. Barrett; Alex Bateman (Nucleic Acids Res., 2010)

Ten Simple Rules for Editing Wikipedia. - Darren W. Logan; Massimo Sandal; Paul P. Gardner; Magnus Manske; Alex Bateman (PLoS Comput. Biol., 2010)

Towards BioDBcore: a community-defined information specification for biological databases. - Pascale Gaudet; Amos Bairoch; Dawn Field; Susanna-Assunta Sansone; Chris F. Taylor; Teresa K. Attwood; Alex Bateman; Judith A. Blake; Carol J. Bult; J. Michael Cherry; Rex L. Chisholm; Guy Cochrane; et al. (Database J. Biol. Databases Curation, 2011)

The rise and fall of supervised machine learning techniques. - Lars Juhl Jensen; Alex Bateman (Bioinform., 2011)

Rfam: Wikipedia, clans and the "decimal" release. - Paul P. Gardner; Jennifer Daub; John G. Tate; Benjamin L. Moore; Isabelle H. Osuch; Sam Griffiths-Jones; Robert D. Finn; Eric P. Nawrocki; Diana L. Kolbe; Sean R. Eddy; Alex Bateman (Nucleic Acids Res., 2011)

Biocurators and Biocuration: surveying the 21st century challenges. - Sarah W. Burge; Teresa K. Attwood; Alex Bateman; Tanya Z. Berardini; J. Michael Cherry; Claire O'Donovan; Ioannis Xenarios; Pascale Gaudet (Database J. Biol. Databases Curation, 2012)

AntiFam: a tool to help identify spurious ORFs in protein annotation. - Ruth Y. Eberhardt; Daniel H. Haft; Marco Punta; Maria Jesus Martin; Claire O'Donovan; Alex Bateman (Database J. Biol. Databases Curation, 2012)

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. - Pascale Gaudet; Cecilia N. Arighi; Frederic B. Bastian; Alex Bateman; Judith A. Blake; J. Michael Cherry; Peter D'Eustachio; Robert D. Finn; Michelle G. Giglio; Lynette Hirschman; Renate Kania; William Klimke; et al. (Database J. Biol. Databases Curation, 2012)

Bioimage informatics: a new category in Bioinformatics. - Hanchuan Peng; Alex Bateman; Alfonso Valencia; Jonathan D. Wren (Bioinform., 2012)

Making your database available through Wikipedia: the pros and cons. - Robert D. Finn; Paul P. Gardner; Alex Bateman (Nucleic Acids Res., 2012)

InterPro in 2011: new developments in the family and domain prediction database. - Sarah Hunter; Philip Jones; Alex L. Mitchell; Rolf Apweiler; Teresa K. Attwood; Alex Bateman; Thomas Bernard; David Binns; Peer Bork; Sarah W. Burge; Edouard De Castro; Penny C. Coggill; et al. (Nucleic Acids Res., 2012)

The Pfam protein families database. - Marco Punta; Penny C. Coggill; Ruth Y. Eberhardt; Jaina Mistry; John G. Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; et al. (Nucleic Acids Res., 2012)

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. - Neil D. Rawlings; Alan J. Barrett; Alex Bateman (Nucleic Acids Res., 2012)

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration. - Pascale Gaudet; Monica C. Munoz-Torres; Marc Robinson-Rechavi; Teresa K. Attwood; Alex Bateman; J. Michael Cherry; Renate Kania; Claire O'Donovan; Chisato Yamasaki (Database J. Biol. Databases Curation, 2013)

The challenge of increasing Pfam coverage of the human proteome. - Jaina Mistry; Penny C. Coggill; Ruth Y. Eberhardt; Antonio Deiana; Andrea Giansanti; Robert D. Finn; Alex Bateman; Marco Punta (Database J. Biol. Databases Curation, 2013)

Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila. - Penelope Coggill; Ruth Y. Eberhardt; Robert D. Finn; Yuanyuan Chang; Lukasz Jaroszewski; Adam Godzik; Debanu Das; Qingping Xu; Herbert L. Axelrod; L. Aravind; Alexey G. Murzin; Alex Bateman (BMC Bioinform., 2013)

Filling out the structural map of the NTF2-like superfamily. - Ruth Y. Eberhardt; Yuanyuan Chang; Alex Bateman; Alexey G. Murzin; Herbert L. Axelrod; William C. Hwang; L. Aravind (BMC Bioinform., 2013)

LUD, a new protein domain associated with lactate utilization. - William C. Hwang; Constantina Bakolitsa; Marco Punta; Penelope Coggill; Alex Bateman; Herbert L. Axelrod; Neil D. Rawlings; Mayya Sedova; Scott N. Peterson; Ruth Y. Eberhardt; L. Aravind; Jaime Pascual; et al. (BMC Bioinform., 2013)

Rfam 11.0: 10 years of RNA families. - Sarah W. Burge; Jennifer Daub; Ruth Y. Eberhardt; John G. Tate; Lars Barquist; Eric P. Nawrocki; Sean R. Eddy; Paul P. Gardner; Alex Bateman (Nucleic Acids Res., 2013)

ISCB Computational Biology Wikipedia Competition. - Alex Bateman; Janet Kelso; Daniel Mietchen; Geoff MacIntyre; Tomás Di Domenico; Thomas Abeel; Darren W. Logan; Predrag Radivojac; Burkhard Rost (PLoS Comput. Biol., 2013)

Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis. - Debanu Das; Alexey G. Murzin; Neil D. Rawlings; Robert D. Finn; Penelope Coggill; Alex Bateman; Adam Godzik; L. Aravind (BMC Bioinform., 2014)

Pfam: the protein families database. - Robert D. Finn; Alex Bateman; Jody Clements; Penelope Coggill; Ruth Y. Eberhardt; Sean R. Eddy; Andreas Heger; Kirstie Hetherington; Liisa Holm; Jaina Mistry; Erik L. L. Sonnhammer; John G. Tate; et al. (Nucleic Acids Res., 2014)

iPfam: a database of protein family and domain interactions found in the Protein Data Bank. - Robert D. Finn; Benjamin L. Miller; Jody Clements; Alex Bateman (Nucleic Acids Res., 2014)

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. - Neil D. Rawlings; Matthew Waller; Alan J. Barrett; Alex Bateman (Nucleic Acids Res., 2014)

TreeFam v9: a new website, more species and orthology-on-the-fly. - Fabian Schreiber; Mateus Patricio; Matthieu Muffato; Miguel Pignatelli; Alex Bateman (Nucleic Acids Res., 2014)

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. - Patricia C. Babbitt; Pantelis G. Bagos; Amos Bairoch; Alex Bateman; Arnaud Chatonnet; Mark Jinan Chen; David J. Craik; Robert D. Finn; David E. Gloriam; Daniel H. Haft; Bernard Henrissat; Gemma L. Holliday; et al. (Database J. Biol. Databases Curation, 2015)

HMMER web server: 2015 update. - Robert D. Finn; Jody Clements; William Arndt; Benjamin L. Miller; Travis J. Wheeler; Fabian Schreiber; Alex Bateman; Sean R. Eddy (Nucleic Acids Res., 2015)

The InterPro protein families database: the classification resource after 15 years. - Alex L. Mitchell; Hsin-Yu Chang; Louise C. Daugherty; Matthew Fraser; Sarah Hunter; Rodrigo Lopez; Craig McAnulla; Conor McMenamin; Gift Nuka; Sebastien Pesseat; Amaia Sangrador-Vegas; Maxim Scheremetjew; et al. (Nucleic Acids Res., 2015)

Rfam 12.0: updates to the RNA families database. - Eric P. Nawrocki; Sarah W. Burge; Alex Bateman; Jennifer Daub; Ruth Y. Eberhardt; Sean R. Eddy; Evan W. Floden; Paul P. Gardner; Thomas A. Jones; John G. Tate; Robert D. Finn (Nucleic Acids Res., 2015)

Crowdsourcing Protein Family Database Curation. - Matt Jeffryes; Maria Liakata; Alex Bateman (ICBO/BioCreative, 2016)

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB. - Tunca Dogan; Alistair MacDougall; Rabie Saidi; Diego Poggioli; Alex Bateman; Claire O'Donovan; Maria Jesus Martin (Bioinform., 2016)

The Pfam protein families database: towards a more sustainable future. - Robert D. Finn; Penelope Coggill; Ruth Y. Eberhardt; Sean R. Eddy; Jaina Mistry; Alex L. Mitchell; Simon C. Potter; Marco Punta; Matloob Qureshi; Amaia Sangrador-Vegas; Gustavo A. Salazar; John G. Tate; et al. (Nucleic Acids Res., 2016)

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study. - Sylvain Poux; Cecilia N. Arighi; Michele Magrane; Alex Bateman; Chih-Hsuan Wei; Zhiyong Lu; Emmanuel Boutet; Hema Bye-A-Jee; Maria Livia Famiglietti; Bernd Roechert; UniProt Consortium (Bioinform., 2017)

InterPro in 2017 - beyond protein family and domain annotations. - Robert D. Finn; Teresa K. Attwood; Patricia C. Babbitt; Alex Bateman; Peer Bork; Alan J. Bridge; Hsin-Yu Chang; Zsuzsanna Dosztányi; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2017)

Gene Unprediction with Spurio: A tool to identify spurious protein sequences. - Wolfram Höps; Matt Jeffryes; Alex Bateman (F1000Research, 2018)

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. - Ioanna Kalvari; Joanna Argasinska; Natalia Quinones-Olvera; Eric P. Nawrocki; Elena Rivas; Sean R. Eddy; Alex Bateman; Robert D. Finn; Anton I. Petrov (Nucleic Acids Res., 2018)

The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database. - Neil D. Rawlings; Alan J. Barrett; Paul D. Thomas; Xiaosong Huang; Alex Bateman; Robert D. Finn (Nucleic Acids Res., 2018)

TADOSS: computational estimation of tandem domain swap stability. - Aleix Lafita; Pengfei Tian; Robert B. Best; Alex Bateman (Bioinform., 2019)

The Pfam protein families database in 2019. - Sara El-Gebali; Jaina Mistry; Alex Bateman; Sean R. Eddy; Aurelien Luciani; Simon C. Potter; Matloob Qureshi; Lorna J. Richardson; Gustavo A. Salazar; Alfredo Smart; Erik L. L. Sonnhammer; Layla Hirsh; et al. (Nucleic Acids Res., 2019)

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. - Rachel Drysdale; Charles E. Cook; Robert Petryszak; Vivienne Baillie Gerritsen; Mary Barlow; Elisabeth Gasteiger; Franziska Gruhl; Jürgen Haas; Jerry Lanfear; Rodrigo Lopez; Nicole Redaschi; Heinz Stockinger; et al. (Bioinform., 2020)

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. - Franziska Hufsky; Kevin Lamkiewicz; Alexandre Almeida; Abdel Aouacheria; Cecilia N. Arighi; Alex Bateman; Jan Baumbach; Niko Beerenwinkel; Christian Brandt; Marco Cacciabue; Sara Chuguransky; Oliver Drechsel; et al. (Briefings Bioinform., 2021)

UniProt: the universal protein knowledgebase in 2021. - Alex Bateman; Maria Jesus Martin; Sandra E. Orchard; Michele Magrane; Rahat Agivetova; Shadab Ahmad; Emanuele Alpi; Emily H. Bowler-Barnett; Ramona Britto; Borisas Bursteinas; Hema Bye-A-Jee; Ray Coetzee; et al. (Nucleic Acids Res., 2021)

The InterPro protein families and domains database: 20 years on. - Matthias Blum; Hsin-Yu Chang; Sara Chuguransky; Tiago Grego; Swaathi Kandasamy; Alex L. Mitchell; Gift Nuka; Typhaine Paysan-Lafosse; Matloob Qureshi; Shriya Raj; Lorna J. Richardson; Gustavo A. Salazar; et al. (Nucleic Acids Res., 2021)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

Rfam 14: expanded coverage of metagenomic, viral and microRNA families. - Ioanna Kalvari; Eric P. Nawrocki; Nancy Ontiveros-Palacios; Joanna Argasinska; Kevin Lamkiewicz; Manja Marz; Sam Griffiths-Jones; Claire Toffano-Nioche; Daniel Gautheret; Zasha Weinberg; Elena Rivas; Sean R. Eddy; et al. (Nucleic Acids Res., 2021)

Pfam: The protein families database in 2021. - Jaina Mistry; Sara Chuguransky; Lowri Williams; Matloob Qureshi; Gustavo A. Salazar; Erik L. L. Sonnhammer; Silvio C. E. Tosatto; Lisanna Paladin; Shriya Raj; Lorna J. Richardson; Robert D. Finn; Alex Bateman (Nucleic Acids Res., 2021)

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. - Blake A. Sweeney; Anton I. Petrov; Carlos Eduardo Ribas; Robert D. Finn; Alex Bateman; Maciej Szymanski; Wojciech M. Karlowski; Stefan E. Seemann; Jan Gorodkin; Jamie J. Cannone; Robin Ray Gutell; Simon Kay; et al. (Nucleic Acids Res., 2021)

Ten simple rules to make your computing more environmentally sustainable. - Loïc Lannelongue; Jason Grealey; Alex Bateman; Michael Inouye (PLoS Comput. Biol., 2021)

A roadmap for the functional annotation of protein families: a community perspective. - Valérie de Crécy-Lagard; Rocio Amorin de Hegedus; Cecilia N. Arighi; Jill Babor; Alex Bateman; Ian Blaby; Crysten Blaby-Haas; Alan J. Bridge; Stephen K. Burley; Stacey Cleveland; Lucy J. Colwell; Ana Conesa; et al. (Database J. Biol. Databases Curation, 2022)

The European Bioinformatics Institute (EMBL-EBI) in 2021. - Gaia Cantelli; Alex Bateman; Cath Brooksbank; Anton I. Petrov; Rahuman S. Malik-Sheriff; Michele Ide-Smith; Henning Hermjakob; Paul Flicek; Rolf Apweiler; Ewan Birney; Johanna R. McEntyre (Nucleic Acids Res., 2022)

DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets. - Elena Tea Russo; Federico Barone; Alex Bateman; Stefano Cozzini; Marco Punta; Alessandro Laio (PLoS Comput. Biol., 2022)

LitSumm: Large language models for literature summarisation of non-coding RNAs. - Andrew Green 001; Carlos Eduardo Ribas; Nancy Ontiveros-Palacios; Anton I. Petrov; Alex Bateman; Blake A. Sweeney (CoRR, 2023)

Database Commons: A Catalog of Worldwide Biological Databases. - Lina Ma; Dong Zou; Lin Liu; Huma Shireen; Amir Ali Abbasi; Alex Bateman; Jing-Fa Xiao; Wenming Zhao; Yiming Bao; Zhang Zhang 002 (Genom. Proteom. Bioinform., 2023)

GREENER principles for environmentally sustainable computational science. - Loïc Lannelongue; Hans-Erik G. Aronson; Alex Bateman; Ewan Birney; Talia Caplan; Martin Juckes; Johanna R. McEntyre; Andrew D. Morris; Gerry Reilly; Michael Inouye (Nat. Comput. Sci., 2023)

Annotation of biologically relevant ligands in UniProtKB using ChEBI. - Elisabeth Coudert; Sebastien Gehant; Edouard De Castro; Monica Pozzato; Delphine Baratin; Teresa Batista Neto; Christian J. A. Sigrist; Nicole Redaschi; Alan J. Bridge; Lucila Aimo; Ghislaine Argoud-Puy; Andrea H. Auchincloss; et al. (Bioinform., 2023)

InterPro in 2022. - Typhaine Paysan-Lafosse; Matthias Blum; Sara Chuguransky; Tiago Grego; Beatriz Lázaro Pinto; Gustavo A. Salazar; Maxwell L. Bileschi; Peer Bork; Alan J. Bridge; Lucy J. Colwell; Julian Gough; Daniel H. Haft; et al. (Nucleic Acids Res., 2023)

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022. - Matthew Thakur; Alex Bateman; Cath Brooksbank; Mallory Ann Freeberg; Melissa Harrison; Matthew Hartley; Thomas M. Keane; Gerard J. Kleywegt; Andrew Leach; Maria Levchenko; Sarah L. Morgan; Ellen M. McDonagh; et al. (Nucleic Acids Res., 2023)

LitSumm: large language models for literature summarization of noncoding RNAs. - Andrew Green 001; Carlos Eduardo Ribas; Nancy Ontiveros-Palacios; Sam Griffiths-Jones; Anton I. Petrov; Alex Bateman; Blake A. Sweeney (Database J. Biol. Databases Curation, 2025)