The Maven vector-thread architecture. - Yunsup Lee; Rimas Avizienis; Alex Bishara; Richard Xia; Derek Lockhart; Christopher Batten; Krste Asanovic (Hot Chips Symposium, 2011)

Exploring the tradeoffs between programmability and efficiency in data-parallel accelerators. - Yunsup Lee; Rimas Avizienis; Alex Bishara; Richard Xia; Derek Lockhart; Christopher Batten; Krste Asanovic (ISCA, 2011)

Read Clouds Uncover Variation in Complex Regions of the Human Genome. - Alex Bishara; Yuling Liu; Dorna Kashef Haghighi; Ziming Weng; Daniel E. Newburger; Robert B. West; Arend Sidow; Serafim Batzoglou (RECOMB, 2015)

Genome assembly methods using read clouds. - Alex Bishara (2017)