Programmable 3D snapshot microscopy with Fourier convolutional networks. - Diptodip Deb; Zhenfei Jiao; Alex B. Chen; Misha B. Ahrens; Kaspar Podgorski; Srinivas C. Turaga (CoRR, 2021)

FourierNets enable the design of highly non-local optical encoders for computational imaging. - Diptodip Deb; Zhenfei Jiao; Ruth R. Sims; Alex B. Chen; Michael Broxton; Misha B. Ahrens; Kaspar Podgorski; Srinivas C. Turaga (NeurIPS, 2022)

BILCO: An Efficient Algorithm for Joint Alignment of Time Series. - Xuelong Mi; Mengfan Wang; Alex Bo-Yuan Chen; Jing-Xuan Lim; Yizhi Wang; Misha B. Ahrens; Guoqiang Yu (NeurIPS, 2022)

ZAPBench: A Benchmark for Whole-Brain Activity Prediction in Zebrafish. - Jan-Matthis Lueckmann; Alexander Immer; Alex Bo-Yuan Chen; Peter H. Li; Mariela D. Petkova; Nirmala A. Iyer; Luuk Willem Hesselink; Aparna Dev; Gudrun Ihrke; Woohyun Park; Alyson Petruncio; Aubrey Weigel; et al. (ICLR, 2025)

Forecasting Whole-Brain Neuronal Activity from Volumetric Video. - Alexander Immer; Jan-Matthis Lueckmann; Alex Bo-Yuan Chen; Peter H. Li; Mariela D. Petkova; Nirmala A. Iyer; Aparna Dev; Gudrun Ihrke; Woohyun Park; Alyson Petruncio; Aubrey Weigel; Wyatt Korff; et al. (CoRR, 2025)