Tableau-based protein substructure search using quadratic programming. - Alex D. Stivala; Anthony Wirth; Peter J. Stuckey (BMC Bioinform., 2009)

Fast and accurate protein substructure searching with simulated annealing and GPUs. - Alex D. Stivala; Peter J. Stuckey; Anthony Wirth (BMC Bioinform., 2010)

Lock-free parallel dynamic programming. - Alex D. Stivala; Peter J. Stuckey; Maria Garcia de la Banda; Manuel V. Hermenegildo; Anthony Wirth (J. Parallel Distributed Comput., 2010)

Algorithms for the study of RNA and protein structure. - Alex D. Stivala (2010)

Automatic generation of protein structure cartoons with Pro-origami. - Alex D. Stivala; Michael Wybrow; Anthony Wirth; James C. Whisstock; Peter J. Stuckey (Bioinform., 2011)

Snowball sampling for estimating exponential random graph models for large networks. - Alex D. Stivala; Johan H. Koskinen; David A. Rolls; Peng Wang 002; Garry Robins (Soc. Networks, 2016)

Using Sampled Network Data With The Autologistic Actor Attribute Model. - Alex D. Stivala; H. Colin Gallagher; David A. Rolls; Peng Wang 002; Garry L. Robins (CoRR, 2020)

Geodesic Cycle Length Distributions in Delusional and Other Social Networks. - Alex D. Stivala (J. Soc. Struct., 2020)

Reply to "Comment on Geodesic Cycle Length Distributions in Delusional and Other Social Networks". - Alex D. Stivala (J. Soc. Struct., 2020)

Testing biological network motif significance with exponential random graph models. - Alex D. Stivala; Alessandro Lomi (Appl. Netw. Sci., 2021)

Geodesic cycle length distributions in fictional character networks. - Alex D. Stivala (CoRR, 2023)

ALAAMEE: Open-source software for fitting autologistic actor attribute models. - Alex D. Stivala; Peng Wang 002; Alessandro Lomi (CoRR, 2024)

Improving exponential-family random graph models for bipartite networks. - Alex D. Stivala; Peng Wang 002; Alessandro Lomi (J. Complex Networks, 2025)