MIMOX: a web tool for phage display based epitope mapping. - Jian Huang 004; Alex Gutteridge; Wataru Honda; Minoru Kanehisa (BMC Bioinform., 2006)

Regulation of metabolic networks by small molecule metabolites. - Alex Gutteridge; Minoru Kanehisa; Susumu Goto (BMC Bioinform., 2007)

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. - Yoshihiro Yamanishi; Michihiro Araki; Alex Gutteridge; Wataru Honda; Minoru Kanehisa (ISMB, 2008)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. - Toshiaki Katayama; Kazuharu Arakawa; Mitsuteru Nakao; Keiichiro Ono; Kiyoko F. Aoki-Kinoshita; Yasunori Yamamoto; Atsuko Yamaguchi; Shuichi Kawashima; Hong-Woo Chun; Jan Aerts; Bruno Aranda; Lord H. Barboza; et al. (J. Biomed. Semant., 2010)

The genetic control of growth rate: a systems biology study in yeast. - Pinar Pir; Alex Gutteridge; Jian Wu; Bharat Rash; Douglas B. Kell; Nianshu Zhang; Stephen G. Oliver (BMC Syst. Biol., 2012)

Molecular causes of transcriptional response: a Bayesian prior knowledge approach. - Kourosh Zarringhalam; Ahmed Enayetallah; Alex Gutteridge; Ben Sidders; Daniel Ziemek (Bioinform., 2013)

Interpreting transcriptional changes using causal graphs: new methods and their practical utility on public networks. - Carl Tony Fakhry; Parul Choudhary; Alex Gutteridge; Ben Sidders; Ping Chen 001; Daniel Ziemek; Kourosh Zarringhalam (BMC Bioinform., 2016)

Benchmarking network propagation methods for disease gene identification. - Sergio Picart-Armada; Steven J. Barrett; David R. Willé; Alexandre Perera-Lluna; Alex Gutteridge; Benoit H. Dessailly (PLoS Comput. Biol., 2019)