Developing a novel integrated model of p38 MAPK and glucocorticoid signalling pathways. - Alex Holehouse; Xian Yang 001; Ian M. Adcock; Yike Guo (CIBCB, 2012)

ProteomeScout: a repository and analysis resource for post-translational modifications and proteins. - Matthew K. Matlock; Alex S. Holehouse; Kristen M. Naegle (Nucleic Acids Res., 2015)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. - Alessio Del Conte; Adel Bouhraoua; Mahta Mehdiabadi; Damiano Clementel; Alexander Miguel Monzon; Alex S. Holehouse; Daniel A. Griffith; Ryan J. Emenecker; Ashwini Patil; Ronesh Sharma; Tatsuhiko Tsunoda; Alok Sharma; et al. (Nucleic Acids Res., 2023)

SHEPHARD: a modular and extensible software architecture for analyzing and annotating large protein datasets. - Garrett M. Ginell; Aidan J. Flynn; Alex S. Holehouse (Bioinform., 2023)

Disentangling Folding from Energetic Traps in Simulations of Disordered Proteins. - Jeffrey M. Lotthammer; Alex S. Holehouse (J. Chem. Inf. Model., 2025)