An effective capacitance model for computing the electronic properties of charged defects in crystals. - Tzu-Liang Chan; Alex J. Lee; James R. Chelikowsky (Comput. Phys. Commun., 2014)

State and trait characteristics of anterior insula time-varying functional connectivity. - Lorenzo Pasquini; Gianina Toller; Adam Staffaroni; Jesse A. Brown; Jersey Deng; Alex J. Lee; Katarzyna Kurcyus; Suzanne M. Shdo; Isabel Allen; Virginia E. Sturm; Yann Cobigo; Valentina Borghesani; et al. (NeuroImage, 2020)

A dynamic gradient architecture generates brain activity states. - Jesse A. Brown; Alex J. Lee; Lorenzo Pasquini; William W. Seeley (NeuroImage, 2022)

Machine Learning for Uncovering Biological Insights in Spatial Transcriptomics Data. - Alex J. Lee; Robert Cahill; Reza Abbasi-Asl (CoRR, 2023)

Zero-shot sampling of adversarial entities in biomedical question answering. - R. Patrick Xian; Alex J. Lee; Vincent Wang 002; Qiming Cui; Russell Ro; Reza Abbasi-Asl (CoRR, 2024)

Opportunities in deep learning methods development for computational biology. - Alex J. Lee; Reza Abbasi-Asl (CoRR, 2024)

Assessing biomedical knowledge robustness in large language models by query-efficient sampling attacks. - Rui Patrick Xian; Alex J. Lee; Satvik Lolla; Vincent Wang 002; Russell Ro; Qiming Cui; Reza Abbasi-Asl (Trans. Mach. Learn. Res., 2024)