Robust Scoring Functions for Protein-Ligand Interactions with Quantum Chemical Charge Models. - Jui-Chih Wang; Jung-Hsin Lin; Chung-Ming Chen; Alex L. Perryman; Arthur J. Olson (J. Chem. Inf. Model., 2011)

Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challenge. - Emilio Gallicchio; Nan-Jie Deng; Peng He; Lauren Wickstrom; Alexander L. Perryman; Daniel N. Santiago; Stefano Forli; Arthur J. Olson; Ronald M. Levy (J. Comput. Aided Mol. Des., 2014)

Blind prediction of HIV integrase binding from the SAMPL4 challenge. - David L. Mobley; Shuai Liu; Nathan M. Lim; Karisa L. Wymer; Alexander L. Perryman; Stefano Forli; Nan-Jie Deng; Justin Su; Kim Branson; Arthur J. Olson (J. Comput. Aided Mol. Des., 2014)

Virtual screening with AutoDock Vina and the common pharmacophore engine of a low diversity library of fragments and hits against the three allosteric sites of HIV integrase: participation in the SAMPL4 protein-ligand binding challenge. - Alexander L. Perryman; Daniel N. Santiago; Stefano Forli; Diogo Santos-Martins; Arthur J. Olson (J. Comput. Aided Mol. Des., 2014)

A Virtual Screen Discovers Novel, Fragment-Sized Inhibitors of Mycobacterium tuberculosis InhA. - Alexander L. Perryman; Weixuan Yu; Xin Wang 067; Sean Ekins; Stefano Forli; Shao-Gang Li; Joel S. Freundlich; Peter J. Tonge; Arthur J. Olson (J. Chem. Inf. Model., 2015)

Machine Learning Model Analysis and Data Visualization with Small Molecules Tested in a Mouse Model of Mycobacterium tuberculosis Infection (2014-2015). - Sean Ekins; Alexander L. Perryman; Alex M. Clark; Robert C. Reynolds; Joel S. Freundlich (J. Chem. Inf. Model., 2016)

Discovery of New Zika Protease and Polymerase Inhibitors through the Open Science Collaboration Project OpenZika. - Melina Mottin; Bruna Katiele de Paula Sousa; Nathalya Cristina de Moraes Roso Mesquita; Ketllyn Irene Zagato de Oliveira; Gabriela Dias Noske; Geraldo Rodrigues Sartori; Aline Albuquerque; Fabio Urbina; Ana C. Puhl; José Teófilo Moreira-Filho; Guilherme E. Souza; Rafael V. C. Guido; et al. (J. Chem. Inf. Model., 2022)