Faster coevolution detection of proteins using maximum similar cliques. - Alex Rodionov; Alexandr Bezginov; Jonathan Rose; Elisabeth R. M. Tillier (BCB, 2010)

A new, fast algorithm for detecting protein coevolution using maximum compatible cliques. - Alex Rodionov; Alexandr Bezginov; Jonathan Rose; Elisabeth R. M. Tillier (Algorithms Mol. Biol., 2011)

Automatic FPGA system and interconnect construction with multicast and customizable topology. - Alex Rodionov; Jonathan Rose (FPT, 2015)

Fine-Grained Interconnect Synthesis. - Alex Rodionov; David Biancolin; Jonathan Rose (ACM Trans. Reconfigurable Technol. Syst., 2016)

Synchronization Constraints for Interconnect Synthesis. - Alex Rodionov; Jonathan Rose (FPGA, 2017)

Automatic Topology Optimization for FPGA Interconnect Synthesis. - Alex Rodionov; Jonathan Rose (FPL, 2018)