A Biologically Informed Method for Detecting Associations with Rare Variants. - Carrie C. Buchanan; John R. Wallace; Alex T. Frase; Eric Torstenson; Sarah A. Pendergrass; Marylyn D. Ritchie (EvoBIO, 2012)

Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets. - Emily Rose Holzinger; Scott M. Dudek; Alex T. Frase; Brooke L. Fridley; Prabhakar Chalise; Marylyn D. Ritchie (EvoBIO, 2012)

ATHENA: A Tool for Meta-Dimensional Analysis Applied to Genotypes and Gene Expression Data to Predict HDL Cholesterol Levels. - Emily Rose Holzinger; Scott M. Dudek; Alex T. Frase; Ronald M. Krauss; Marisa Wong Medina; Marylyn D. Ritchie (Pacific Symposium on Biocomputing, 2013)

Using BioBin to Explore Rare Variant Population Stratification. - Carrie Moore; John R. Wallace; Alex T. Frase; Sarah A. Pendergrass; Marylyn D. Ritchie (Pacific Symposium on Biocomputing, 2013)

Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation, and model development. - Sarah A. Pendergrass; Alex T. Frase; John R. Wallace; Daniel Wolfe; Neerja Katiyar; Carrie Moore; Marylyn D. Ritchie (BioData Min., 2013)

Knowledge-driven genomic interactions: an application in ovarian cancer. - Do Kyoon Kim; Ruowang Li; Scott M. Dudek; Alex T. Frase; Sarah A. Pendergrass; Marylyn D. Ritchie (BioData Min., 2014)

ATHENA: the analysis tool for heritable and environmental network associations. - Emily Rose Holzinger; Scott M. Dudek; Alex T. Frase; Sarah A. Pendergrass; Marylyn D. Ritchie (Bioinform., 2014)

Biofilter as a Functional Annotation Pipeline for Common and Rare Copy Number Burden. - Dokyoon Kim; Anastasia Lucas; Joseph Glessner; Shefali S. Verma; Yukiko Bradford; Ruowang Li; Alex T. Frase; Hakon Hakonarson; Peggy L. Peissig; Murray H. Brilliant; Marylyn D. Ritchie (PSB, 2016)

Phenome-Wide Interaction Study (PheWIS) in Aids Clinical Trials Group Data (ACTG). - Shefali S. Verma; Alex T. Frase; Anurag Verma; Sarah A. Pendergrass; Shaun Mahony; David W. Haas; Marylyn D. Ritchie (PSB, 2016)

Integrating Clinical Laboratory Measures and ICD-9 Code Diagnoses in Phenome-Wide Association Studies. - Anurag Verma; Joseph B. Leader; Shefali S. Verma; Alex T. Frase; John R. Wallace; Scott M. Dudek; Daniel R. Lavage; Cristopher V. Van Hout; Frederick E. Dewey; John Penn; Alexander E. Lopez; John D. Overton; et al. (PSB, 2016)

A biologically informed method for detecting rare variant associations. - Carrie Colleen Buchanan Moore; Anna Okula Basile; John R. Wallace; Alex Thomas Frase; Marylyn DeRiggi Ritchie (BioData Min., 2016)

Pathway analysis by randomization incorporating structure - PARIS: an update. - Mariusz Butkiewicz; Jessica Cooke Bailey; Alex T. Frase; Scott M. Dudek; Brian L. Yaspan; Marylyn D. Ritchie; Sarah A. Pendergrass; Jonathan L. Haines (Bioinform., 2016)

Novel features and enhancements in BioBin, a tool for the biologically inspired binning and association analysis of rare variants. - Anna Okula Basile; Marta Byrska-Bishop; John R. Wallace; Alex Thomas Frase; Marylyn D. Ritchie (Bioinform., 2018)