An approximation algorithm for weighted itk-polymatroids and the Steiner tree problem in graphs. - Alexander Zelikovsky (IPCO, 1993)

An 11/6-Approximation Algorithm for the Network Steiner Problem. - Alexander Zelikovsky (Algorithmica, 1993)

The last achievements in Steiner tree approximations. - Alexander Zelikovsky (Comput. Sci. J. Moldova, 1993)

A Faster Approximation Algorithm for the Steiner Tree Problem in Graphs. - Alexander Zelikovsky (Inf. Process. Lett., 1993)

Approaching the 5/4-Approximation for Rectilinear Steiner Trees. - Piotr Berman; Ulrich Fößmeier; Marek Karpinski; Michael Kaufmann 001; Alexander Zelikovsky (ESA, 1994)

Spanning Closed Trail and Hamiltonian Cycle in Grid Graphs. - Cho Hwan-Gue; Alexander Zelikovsky (ISAAC, 1995)

1.757 and 1.267 - Approximation Algorithms for the Network and Rectilinear Steiner Tree Problems - Marek Karpinski; Alexander Zelikovsky (Electron. Colloquium Comput. Complex., 1995)

New Approximation Algorithms for the Steiner Tree Problems - Marek Karpinski; Alexander Zelikovsky (Electron. Colloquium Comput. Complex., 1995)

Provably good routing tree construction with multi-port terminals. - C. Douglass Bateman; Christopher S. Helvig; Gabriel Robins; Alexander Zelikovsky (ISPD, 1997)

A Series of Approximation Algorithms for the Acyclic Directed Steiner Tree Problem. - Alexander Zelikovsky (Algorithmica, 1997)

Faster Approximation Algorithms for the Rectilinear Steiner Tree Problem. - Ulrich Fößmeier; Michael Kaufmann 001; Alexander Zelikovsky (Discret. Comput. Geom., 1997)

Approximating Dense Cases of Covering Problems - Marek Karpinski; Alexander Zelikovsky (Electron. Colloquium Comput. Complex., 1997)

An Approximation Algorithm for the Bandwidth Problem on Dense Graphs - Marek Karpinski; Juergen Wirtgen; Alexander Zelikovsky (Electron. Colloquium Comput. Complex., 1997)

Improved Approximation Bounds for the Group Steiner Problem. - Christopher S. Helvig; Gabriel Robins; Alexander Zelikovsky (DATE, 1998)

Moving-Target TSP and Related Problems. - Christopher S. Helvig; Gabriel Robins; Alexander Zelikovsky (ESA, 1998)

Filling and slotting: analysis and algorithms. - Andrew B. Kahng; Gabriel Robins; Anish Singh; Huijuan Wang; Alexander Zelikovsky (ISPD, 1998)

New Multilevel and Hierarchical Algorithms for Layout Density Control. - Andrew B. Kahng; Gabriel Robins; Anish Singh; Alexander Zelikovsky (ASP-DAC, 1999)

Optimization of Linear Placements for Wirelength Minimization with Free Sites. - Andrew B. Kahng; Paul Tucker; Alexander Zelikovsky (ASP-DAC, 1999)

The associative-skew clock routing problem. - Yu Chen 005; Andrew B. Kahng; Gang Qu 001; Alexander Zelikovsky (ICCAD, 1999)

Optimal phase conflict removal for layout of dark field alternating phase shifting masks. - Piotr Berman; Andrew B. Kahng; Devendra Vidhani; Huijuan Wang; Alexander Zelikovsky (ISPD, 1999)

New and Exact Filling Algorithms for Layout Density Control. - Andrew B. Kahng; Gabriel Robins; Anish Singh; Alexander Zelikovsky (VLSI Design, 1999)

The T-join Problem in Sparse Graphs: Applications to Phase Assignment Problem in VLSI Mask Layout. - Piotr Berman; Andrew B. Kahng; Devendra Vidhani; Alexander Zelikovsky (WADS, 1999)

On wirelength estimations for row-based placement. - Andrew E. Caldwell; Andrew B. Kahng; Stefanus Mantik; Igor L. Markov; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1999)

Filling algorithms and analyses for layout density control. - Andrew B. Kahng; Gabriel Robins; Anish Singh; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1999)

Monte-Carlo algorithms for layout density control. - Yu Chen 005; Andrew B. Kahng; Gabriel Robins; Alexander Zelikovsky (ASP-DAC, 2000)

Practical iterated fill synthesis for CMP uniformity. - Yu Chen 005; Andrew B. Kahng; Gabriel Robins; Alexander Zelikovsky (DAC, 2000)

Provably Good Global Buffering Using an Available Buffer Block Plan. - Feodor F. Dragan; Andrew B. Kahng; Ion I. Mandoiu; Sudhakar Muddu; Alexander Zelikovsky (ICCAD, 2000)

Improved Steiner tree approximation in graphs. - Gabriel Robins; Alexander Zelikovsky (SODA, 2000)

A note on the MST heuristic for bounded edge-length Steiner trees with minimum number of Steiner points. - Ion I. Mandoiu; Alexander Zelikovsky (Inf. Process. Lett., 2000)

Optimal phase conflict removal for layout of dark field alternatingphase shifting masks. - Piotr Berman; Andrew B. Kahng; Devendra Vidhani; Huijuan Wang; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2000)

New approximation algorithms for routing with multiport terminals. - Christopher S. Helvig; Gabriel Robins; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2000)

Hierarchical dummy fill for process uniformity. - Yu Chen 005; Andrew B. Kahng; Gabriel Robins; Alexander Zelikovsky (ASP-DAC, 2001)

Provably good global buffering by multi-terminal multicommodity flow approximation. - Feodor F. Dragan; Andrew B. Kahng; Ion I. Mandoiu; Sudhakar Muddu; Alexander Zelikovsky (ASP-DAC, 2001)

New graph bipartizations for double-exposure, bright field alternating phase-shift mask layout. - Andrew B. Kahng; Shailesh Vaya; Alexander Zelikovsky (ASP-DAC, 2001)

Minimum-Buffered Routing of Non-Critical Nets for Slew Rate and Reliability Control. - Charles J. Alpert; Andrew B. Kahng; Bao Liu 001; Ion I. Mandoiu; Alexander Zelikovsky (ICCAD, 2001)

Practical Approximation Algorithms for Separable Packing Linear Programs. - Feodor F. Dragan; Andrew B. Kahng; Ion I. Mandoiu; Sudhakar Muddu; Alexander Zelikovsky (WADS, 2001)

An improved approximation scheme for the Group Steiner Problem. - Christopher S. Helvig; Gabriel Robins; Alexander Zelikovsky (Networks, 2001)

Practical Approximation Algorithms for Zero- and Bounded-Skew Trees. - Alexander Zelikovsky; Ion I. Mandoiu (SIAM J. Discret. Math., 2001)

Mobile Fleet Application using Soap and System on Devices (SYD) Middleware Technologies. - Sushil K. Prasad; Michael Weeks; Yanqing Zhang 001; Alexander Zelikovsky; Saeid Belkasim; Rajshekhar Sunderraman; Vijay K. Madisetti (Communications, Internet, and Information Technology, 2002)

Auctions with Buyer Preferences. - C. Bandela; Yu Chen 005; Andrew B. Kahng; Ion I. Mandoiu; Alexander Zelikovsky (Information Systems: The e-Business Challenge, 2002)

Symmetric Connectivity with Minimum Power Consumption in Radio Networks. - Gruia Calinescu; Ion I. Mandoiu; Alexander Zelikovsky (IFIP TCS, 2002)

Closing the smoothness and uniformity gap in area fill synthesis. - Yu Chen 005; Andrew B. Kahng; Gabriel Robins; Alexander Zelikovsky (ISPD, 2002)

Floorplan Evaluation with Timing-Driven Global Wireplanning, Pin Assignment and Buffer/Wire Sizing. - Christoph Albrecht; Andrew B. Kahng; Ion I. Mandoiu; Alexander Zelikovsky (ASP-DAC/VLSI Design, 2002)

Border Length Minimization in DNA Array Design. - Andrew B. Kahng; Ion I. Mandoiu; Pavel A. Pevzner; Sherief Reda; Alexander Zelikovsky (WABI, 2002)

A note on the colorability of mixed hypergraph using k colors. - Dmitrii Lozovanu; Vitaly I. Voloshin; Alex Zelikovsky (Comput. Sci. J. Moldova, 2002)

Area fill synthesis for uniform layout density. - Yu Chen 005; Andrew B. Kahng; Gabriel Robins; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2002)

Provably good global buffering by generalized multiterminalmulticommodity flow approximation. - Feodor F. Dragan; Andrew B. Kahng; Ion I. Mandoiu; Sudhakar Muddu; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2002)

Highly scalable algorithms for rectilinear and octilinear Steiner trees. - Andrew B. Kahng; Ion I. Mandoiu; Alexander Zelikovsky (ASP-DAC, 2003)

Toward an Easy Programming Environment for Implementing Mobile Applications: A Fleet Application Case Study using SyD Middleware. - Sushil K. Prasad; Michael Weeks; Yanqing Zhang 001; Alexander Zelikovsky; Saeid Belkasim; Raj Sunderraman; Vijay K. Madisetti (COMPSAC, 2003)

Area Fill Generation With Inherent Data Volume Reduction. - Yu Chen 005; Andrew B. Kahng; Gabriel Robins; Alexander Zelikovsky; Yuhong Zheng (DATE, 2003)

Network Lifetime and Power Assignment in ad hoc Wireless Networks. - Gruia Calinescu; Sanjiv Kapoor; Alexander Olshevsky; Alexander Zelikovsky (ESA, 2003)

Primal-dual algorithms for QoS multimedia multicast. - Gruia Calinescu; Cristina G. Fernandes; Ion I. Mandoiu; Alexander Olshevsky; K. Yang; Alexander Zelikovsky (GLOBECOM, 2003)

Evaluation of Placement Techniques for DNA Probe Array Layout. - Andrew B. Kahng; Ion I. Mandoiu; Sherief Reda; Xu Xu 001; Alexander Zelikovsky (ICCAD, 2003)

Design Flow Enhancements for DNA Arrays. - Andrew B. Kahng; Ion I. Mandoiu; Sherief Reda; Xu Xu 001; Alexander Zelikovsky (ICCD, 2003)

Engineering a scalable placement heuristic for DNA probe arrays. - Andrew B. Kahng; Ion I. Mandoiu; Pavel A. Pevzner; Sherief Reda; Alexander Zelikovsky (RECOMB, 2003)

Improved Approximation Algorithms for the Quality of Service Steiner Tree Problem. - Marek Karpinski; Ion I. Mandoiu; Alexander Olshevsky; Alexander Zelikovsky (WADS, 2003)

Power efficient range assignment in ad-hoc wireless networks. - Ernst Althaus; Gruia Calinescu; Ion I. Mandoiu; Sushil K. Prasad; N. Tchervenski; Alexander Zelikovsky (WCNC, 2003)

A New Approximation Algorithm for Finding Heavy Planar Subgraphs. - Gruia Calinescu; Cristina G. Fernandes; Howard J. Karloff; Alexander Zelikovsky (Algorithmica, 2003)

The moving-target traveling salesman problem. - Christopher S. Helvig; Gabriel Robins; Alexander Zelikovsky (J. Algorithms, 2003)

On the skew-bounded minimum-buffer routing tree problem. - Christoph Albrecht; Andrew B. Kahng; Bao Liu 001; Ion I. Mandoiu; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2003)

Minimum buffered routing with bounded capacitive load for slew rate and reliability control. - Charles J. Alpert; Andrew B. Kahng; Bao Liu 001; Ion I. Mandoiu; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2003)

Evaluation of the new OASIS format for layout fill compression. - Yu Chen 005; Andrew B. Kahng; Gabriel Robins; Alexander Zelikovsky; Yuhong Zheng (ICECS, 2004)

Multi-project reticle floorplanning and wafer dicing. - Andrew B. Kahng; Ion I. Mandoiu; Qinke Wang; Xu Xu 001; Alexander Zelikovsky (ISPD, 2004)

SyD: A Middleware Testbed for Collaborative Applications over Small Heterogeneous Devices and Data Stores. - Sushil K. Prasad; Vijay K. Madisetti; Shamkant B. Navathe; Raj Sunderraman; Erdogan Dogdu; Anu G. Bourgeois; Michael Weeks; Bing Liu 003; Janaka Balasooriya; Arthi Hariharan; Wanxia Xie; Praveen Madiraju; et al. (Middleware, 2004)

Linear Reduction for Haplotype Inference. - Jingwu He; Alexander Zelikovsky (WABI, 2004)

Power efficient monitoring management in sensor networks. - Piotr Berman; Gruia Calinescu; C. Shah; Alexander Zelikovsky (WCNC, 2004)

Scalable Heuristics for Design of DNA Probe Arrays. - Andrew B. Kahng; Ion I. Mandoiu; Pavel A. Pevzner; Sherief Reda; Alexander Zelikovsky (J. Comput. Biol., 2004)

Selecting Forwarding Neighbors in Wireless Ad Hoc Networks. - Gruia Calinescu; Ion I. Mandoiu; Peng-Jun Wan; Alexander Zelikovsky (Mob. Networks Appl., 2004)

Bright-Field AAPSM Conflict Detection and Correction. - Charles C. Chiang; Andrew B. Kahng; Subarna Sinha; Xu Xu 001; Alexander Zelikovsky (DATE, 2005)

Phasing and Missing Data Recovery in Family Trios. - Dumitru Brinza; Jingwu He; Weidong Mao; Alexander Zelikovsky (International Conference on Computational Science (2), 2005)

Energy-efficient continuous and event-driven monitoring. - Dumitru Brinza; Gruia Calinescu; Sutep Tongngam; Alexander Zelikovsky (MASS, 2005)

GKM over large MANET. - Sunsook Jung; Nisar Hundewale; Alexander Zelikovsky (SNPD, 2005)

Node caching enhancement of reactive ad hoc routing protocols [MANET]. - Sunsook Jung; Nisar Hundewale; Alex Zelikovsky (WCNC, 2005)

Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem. - Marek Karpinski; Ion I. Mandoiu; Alexander Olshevsky; Alexander Zelikovsky (Algorithmica, 2005)

Multicommodity Flow Algorithms for Buffered Global Routing - Christoph Albrecht; Andrew B. Kahng; Ion I. Mandoiu; Alexander Zelikovsky (CoRR, 2005)

Family trio phasing and missing data recovery. - Dumitru Brinza; Jingwu He; Weidong Mao; Alexander Zelikovsky (Int. J. Bioinform. Res. Appl., 2005)

Linear reduction method for predictive and informative tag SNP selection. - Jingwu He; Kelly Westbrooks; Alexander Zelikovsky (Int. J. Bioinform. Res. Appl., 2005)

The Polymatroid Steiner Problems. - Gruia Calinescu; Alexander Zelikovsky (J. Comb. Optim., 2005)

Tighter Bounds for Graph Steiner Tree Approximation. - Gabriel Robins; Alexander Zelikovsky (SIAM J. Discret. Math., 2005)

Compressible area fill synthesis. - Yu Chen 005; Andrew B. Kahng; Gabriel Robins; Alexander Zelikovsky; Yuhong Zheng (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2005)

Applications of the Linear Matroid Parity Algorithm to Approximating Steiner Trees. - Piotr Berman; Martin Fürer; Alexander Zelikovsky (CSR, 2006)

Combinatorial Search Methods for Multi-SNP Disease Association. - Dumitru Brinza; Jingwu He; Alexander Zelikovsky (EMBC, 2006)

Multiple Linear Regression for Index SNP Selection on Unphased Genotypes. - Jingwu He; Alex Zelikovsky (EMBC, 2006)

Hybrid SVM Kernels for Protein Secondary Structure Prediction. - Gulsah Altun; Hae-Jin Hu; Dumitru Brinza; Robert W. Harrison; Alexander Zelikovsky; Yi Pan 001 (GrC, 2006)

Haplotype tagging using support vector machines. - Jingwu He; Jun Zhang; Gulsah Altun; Alexander Zelikovsky; Yanqing Zhang 001 (GrC, 2006)

Genotype susceptibility and integrated risk factors for complex diseases. - Weidong Mao; Dumitru Brinza; Nisar Hundewale; Stefan Gremalschi; Alexander Zelikovsky (GrC, 2006)

Phasing of 2-SNP Genotypes Based on Non-random Mating Model. - Dumitru Brinza; Alexander Zelikovsky (International Conference on Computational Science (2), 2006)

Tag SNP Selection Based on Multivariate Linear Regression. - Jingwu He; Alexander Zelikovsky (International Conference on Computational Science (2), 2006)

Fill for shallow trench isolation CMP. - Andrew B. Kahng; Puneet Sharma; Alexander Zelikovsky (ICCAD, 2006)

DEEPS: Deterministic Energy-Efficient Protocol for Sensor networks. - Dumitru Brinza; Alexander Zelikovsky (SNPD, 2006)

Maximum Lifetime of Sensor Networks with Adjustable Sensing Range. - Akshaye Dhawan; Chinh T. Vu; Alexander Zelikovsky; Yingshu Li; Sushil K. Prasad (SNPD, 2006)

Combinatorial Methods for Disease Association Search and Susceptibility Prediction. - Dumitru Brinza; Alexander Zelikovsky (WABI, 2006)

2SNP: scalable phasing based on 2-SNP haplotypes. - Dumitru Brinza; Alexander Zelikovsky (Bioinform., 2006)

MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression. - Jingwu He; Alexander Zelikovsky (Bioinform., 2006)

Computer-Aided Optimization of DNA Array Design and Manufacturing. - Andrew B. Kahng; Ion I. Mandoiu; Sherief Reda; Xu Xu 001; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2006)

Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks. - Ernst Althaus; Gruia Calinescu; Ion I. Mandoiu; Sushil K. Prasad; N. Tchervenski; Alexander Zelikovsky (Wirel. Networks, 2006)

Routing Using Messengers in Sparse and Disconnected Mobile Sensor Networks. - Qiong Cheng; Yanqing Zhang 001; Xiaolin Hu 002; Nisar Hundewale; Alexander Zelikovsky (Advances in Web Intelligence and Data Mining, 2006)

Discrete Methods for Association Search and Status Prediction in Genotype Case-Control Studies. - Dumitru Brinza; Alexander Zelikovsky (BIBE, 2007)

Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways. - Qiong Cheng; Robert W. Harrison; Alexander Zelikovsky (BIBE, 2007)

Risk Factor Searching Heuristics for SNP Case-Control Studies. - Dumitru Brinza; Alexander Zelikovsky (BIBM, 2007)

A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. - Réka Albert; Bhaskar DasGupta; Riccardo Dondi; Sema Kachalo; Eduardo D. Sontag; Alexander Zelikovsky; Kelly Westbrooks (J. Comput. Biol., 2007)

Selected Papers from the 1st ACIS International Workshop on Self-Assembling Wireless Networks. - Gruia Calinescu; Ion I. Mandoiu; Alexander Zelikovsky; Marius Zimand (J. Univers. Comput. Sci., 2007)

Energy Efficient Node Caching and Load Balancing Enhancement of Reactive Ad Hoc Routing Protocols. - Nisar Hundewale; Sunsook Jung; Alexander Zelikovsky (J. Univers. Comput. Sci., 2007)

Fast and Efficient Bright-Field AAPSM Conflict Detection and Correction. - Charles C. Chiang; Andrew B. Kahng; Subarna Sinha; Xu Xu 001; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2007)

Enhanced Design Flow and Optimizations for Multiproject Wafers. - Andrew B. Kahng; Ion I. Mandoiu; Xu Xu 001; Alexander Zelikovsky (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2007)

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. - Ion I. Mandoiu; Yi Pan 001; Alexander Zelikovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Multicommodity Flow Algorithms for Buffered Global Routing. - Ion I. Mandoiu; Andrew B. Kahng; Christoph Albrecht; Alexander Zelikovsky (Handbook of Approximation Algorithms and Metaheuristics, 2007)

Practical Approximations of Steiner Trees in Uniform Orientation Metrics. - Ion I. Mandoiu; Andrew B. Kahng; Alexander Zelikovsky (Handbook of Approximation Algorithms and Metaheuristics, 2007)

QoS Multimedia Multicast Routing. - Ion I. Mandoiu; Alex Olshevsky; Alexander Zelikovsky (Handbook of Approximation Algorithms and Metaheuristics, 2007)

Fast Alignments of Metabolic Networks. - Qiong Cheng; Piotr Berman; Robert W. Harrison; Alexander Zelikovsky (BIBM, 2008)

HCV Quasispecies Assembly Using Network Flows. - Kelly Westbrooks; Irina Astrovskaya; David S. Campo; Yuri Khudyakov; Piotr Berman; Alexander Zelikovsky (ISBRA, 2008)

A Factor 3/2 Approximation for Generalized Steiner Tree Problem with Distances One and Two - Piotr Berman; Marek Karpinski; Alexander Zelikovsky (CoRR, 2008)

1.25 Approximation Algorithm for the Steiner Tree Problem with Distances One and Two. - Piotr Berman; Marek Karpinski; Alexander Zelikovsky (Electron. Colloquium Comput. Complex., 2008)

Design and Validation of Methods Searching for Risk Factors in Genotype Case-Control Studies. - Dumitru Brinza; Alexander Zelikovsky (J. Comput. Biol., 2008)

2SNP: Scalable Phasing Method for Trios and Unrelated Individuals. - Dumitru Brinza; Alexander Zelikovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Minimum Steiner Tree Construction. - Gabriel Robins; Alexander Zelikovsky (Handbook of Algorithms for Physical Design Automation, 2008)

Scheduling Bursts Using Interval Graphs in Optical Burst Switching Networks. - Xiaojun Cao; Yichuan Wang; Alex Zelikovsky (GLOBECOM, 2009)

Mean Square Residue Biclustering with Missing Data and Row Inversions. - Stefan Gremalschi; Gulsah Altun; Irina Astrovskaya; Alexander Zelikovsky (ISBRA, 2009)

1.25-Approximation Algorithm for Steiner Tree Problem with Distances 1 and 2. - Piotr Berman; Marek Karpinski; Alexander Zelikovsky (WADS, 2009)

Genotype Tagging with Limited Overfitting. - Irina Astrovskaya; Alexander Zelikovsky (BSB, 2009)

MetNetAligner: a web service tool for metabolic network alignments. - Qiong Cheng; Robert W. Harrison; Alexander Zelikovsky (Bioinform., 2009)

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. - Ion I. Mandoiu; Yi Pan 001; Raj Sunderraman; Alexander Zelikovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Bottleneck Steiner Tree Problems. - Alexander Zelikovsky (Encyclopedia of Optimization, 2009)

WS-GraphMatching: a web service tool for graph matching. - Qiong Cheng; Mitsunori Ogihara; Jinpeng Wei; Alexander Zelikovsky (CIKM, 2010)

Efficient Alignments of Metabolic Networks with Bounded Treewidth. - Qiong Cheng; Piotr Berman; Robert W. Harrison; Alexander Zelikovsky (ICDM Workshops, 2010)

Fixed-Parameter Tractable Combinatorial Algorithms for Metabolic Networks Alignments. - Qiong Cheng; Jinpeng Wei; Alexander Zelikovsky; Mitsunori Ogihara (ICDM Workshops, 2010)

A 3/2-Approximation Algorithm for Generalized Steiner Trees in Complete Graphs with Edge Lengths 1 and 2. - Piotr Berman; Marek Karpinski; Alexander Zelikovsky (ISAAC (1), 2010)

Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Ion I. Mandoiu; Alexander Zelikovsky (BIBM Workshops, 2011)

RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes. - Serghei Mangul; Adrian Caciula; Ion I. Mandoiu; Alexander Zelikovsky (BIBM Workshops, 2011)

Poster: ViSpA: Viral spectrum assembling method. - Irina Astrovskaya; Bassam Tork; Serghei Mangul; Kelly Westbrooks; Ion I. Mandoiu; Peter Balfe; Alexander Zelikovsky (ICCABS, 2011)

Poster: Scaffolding draft genomes using paired sequencing data. - James Lindsay; J. Zhang; T. Farnham; Y. Wu; Ion I. Mandoiu; Rachel J. O'Neill; Hamed Salooti; E. Bullwinkel; Alexander Zelikovsky (ICCABS, 2011)

Poster: Haplotype discovery from high-throughput sequencing data. - Serghei Mangul; Alexander Zelikovsky (ICCABS, 2011)

Invited: Metabolic network alignments. - Alexander Zelikovsky (ICCABS, 2011)

Collaborative Topology Control for Lifetime Maximization. - Lei Shi 014; Wen-Zhan Song 001; Mingsen Xu; Alex Zelikovsky; Li Yu 001 (MSN, 2011)

Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data. - Serghei Mangul; Irina Astrovskaya; Marius Nicolae; Bassam Tork; Ion I. Mandoiu; Alexander Zelikovsky (WABI, 2011)

Estimation of alternative splicing isoform frequencies from RNA-Seq data. - Marius Nicolae; Serghei Mangul; Ion I. Mandoiu; Alex Zelikovsky (Algorithms Mol. Biol., 2011)

Inferring viral quasispecies spectra from 454 pyrosequencing reads. - Irina Astrovskaya; Bassam Tork; Serghei Mangul; Kelly Westbrooks; Ion I. Mandoiu; Peter Balfe; Alex Zelikovsky (BMC Bioinform., 2011)

Combinatorial Optimization Algorithms for Metabolic Networks Alignments and Their Applications. - Qiong Cheng; Alexander Zelikovsky (Int. J. Knowl. Discov. Bioinform., 2011)

Optimal Testing of Digital Microfluidic Biochips. - Bogdan Pasaniuc; Robert S. Garfinkel; Ion I. Mandoiu; Alexander Zelikovsky (INFORMS J. Comput., 2011)

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. - Mark Borodovsky; Teresa M. Przytycka; Sanguthevar Rajasekaran; Alexander Zelikovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Scalable genome scaffolding using integer linear programming. - James Lindsay; Hamed Salooti; Alexander Zelikovsky; Ion I. Mandoiu (BCB, 2012)

Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming. - James Lindsay; Ion I. Mandoiu; Hamed Salooti; Alexander Zelikovsky (ICCABS, 2012)

Workshop: A maximum likelihood method for quasispecies spectrum assembly. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Lilia Ganova-Raeva; Ion I. Mandoiu; Alexander Zelikovsky (ICCABS, 2012)

Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution. - Serghei Mangul; Adrian Caciula; Ion I. Mandoiu; Alexander Zelikovsky (ICCABS, 2012)

Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data. - Rachel J. O'Neill; Ion I. Mandoiu; Mazhar I. Khan; Craig Obergfell; Hongjun Wang; Andrew Bligh; Bassam Tork; Nicholas Mancuso; Alexander Zelikovsky (ICCABS, 2012)

Maximum Series-Parallel Subgraph. - Gruia Calinescu; Cristina G. Fernandes; Hemanshu Kaul; Alexander Zelikovsky (Algorithmica, 2012)

Guest Editors' Introduction. - Jianer Chen; Ion I. Mandoiu; Raj Sunderraman; Jianxin Wang 001; Alexander Zelikovsky (BMC Bioinform., 2012)

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads. - Serghei Mangul; Adrian Caciula; Dumitru Brinza; Ion I. Mandoiu; Alex Zelikovsky (BMC Bioinform., 2012)

Efficient error correction for next-generation sequencing of viral amplicons. - Pavel Skums; Zoya Dimitrova; David S. Campo; Gilberto Vaughan; Livia Rossi; Joseph C. Forbi; Jonny Yokosawa; Alex Zelikovsky; Yuri Khudyakov (BMC Bioinform., 2012)

Reconstructing viral quasispecies from NGS amplicon reads. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Lilia Ganova-Raeva; Ion I. Mandoiu; Alex Zelikovsky (Silico Biol., 2012)

Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations. - Serghei Mangul; Adrian Caciula; Olga Glebova; Ion I. Mandoiu; Alex Zelikovsky (Silico Biol., 2012)

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. - Jianer Chen; Alexander Zelikovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

kGEM: An EM-based algorithm for local reconstruction of viral quasispecies. - Alexander Artyomenko; Nicholas Mancuso; Alex Zelikovsky; Pavel Skums; Ion I. Mandoiu (ICCABS, 2013)

Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data. - Adrian Caciula; Alex Zelikovsky; Serghei Mangul; James Lindsay; Ion I. Mandoiu (ICCABS, 2013)

Reference assisted nucleic acid sequence reconstruction from mass spectrometry data. - Gabriel Ilie; Alex Zelikovsky; Ion I. Mandoiu (ICCABS, 2013)

Estimation of viral population structure from amplicon-based reads. - Nicholas Mancuso; Alexander Artyomenko; Alex Zelikovsky; Pavel Skums; Ion I. Mandoiu (ICCABS, 2013)

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data. - Serghei Mangul; Sahar Al Seesi; Ion I. Mandoiu; Adrian Caciula; Alex Zelikovsky; Dumitru Brinza (ICCABS, 2013)

Optimizing pooling strategies for the massive next-generation sequencing of viral samples. - Pavel Skums; Olga Glebova; Alex Zelikovsky; Ion I. Mandoiu; Yuri Khudyakov (ICCABS, 2013)

Alignment of DNA Mass-Spectral Profiles Using Network Flows. - Pavel Skums; Olga Glebova; Alex Zelikovsky; Zoya Dimitrova; David Stiven Campo Rendon; Lilia Ganova-Raeva; Yuri Khudyakov (ISBRA, 2013)

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows. - Pavel Skums; Nicholas Mancuso; Alexander Artyomenko; Bassam Tork; Ion I. Mandoiu; Yuri Khudyakov; Alex Zelikovsky (BMC Bioinform., 2013)

Distributed Algorithms for TDMA Link Scheduling in Sensor Networks. - Thamer Alsulaiman; Sushil K. Prasad; Alexander Zelikovsky (Int. J. Netw. Comput., 2013)

Guest Editors' introduction to the special section on bioinformatics research and applications. - Ion I. Mandoiu; Jianxin Wang 001; Alexander Zelikovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Reconstruction of influenza a virus variants from PacBio reads. - Alexander Artyomenko; Serghei Mangul; Nicholas C. Wu; Eleazar Eskin; Ren Sun; Alex Zelikovsky (ICCABS, 2014)

Deterministic regression algorithm for transcriptome frequency estimation. - Adrian Caciula; Olga Glebova; Alexander Artyomenko; Serghei Mangul; James Lindsay; Ion I. Mandoiu; Alex Zelikovsky (ICCABS, 2014)

SILP3: Maximum likelihood approach to scaffolding. - Igor Mandric; James Lindsay; Ion I. Mandoiu; Alex Zelikovsky (ICCABS, 2014)

VGA: A method for viral quasispecies assembly from ultra-deep sequencing data. - Serghei Mangul; Nicholas C. Wu; Nicholas Mancuso; Alex Zelikovsky; Ren Sun; Eleazar Eskin (ICCABS, 2014)

Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data. - Pavel Skums; Alexander Artyomenko; Olga Glebova; Alex Zelikovsky; David S. Campo; Zoya Dimitrova; Yuri Khudyakov (ICCABS, 2014)

Accurate viral population assembly from ultra-deep sequencing data. - Serghei Mangul; Nicholas C. Wu; Nicholas Mancuso; Alex Zelikovsky; Ren Sun; Eleazar Eskin (Bioinform., 2014)

ILP-based maximum likelihood genome scaffolding. - James Lindsay; Hamed Salooti; Ion I. Mandoiu; Alexander Zelikovsky (BMC Bioinform., 2014)

2SNV: Quasispecies reconstruction from PacBio reads. - Alexander Artyomenko; Nicholas C. Wu; Serghei Mangul; Eleazar Eskin; Ren Sun; Alex Zelikovsky (ICCABS, 2015)

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire. - Ekaterina Nenastyeva; Alex Zelikovsky; Yurij Ionov; Ion I. Mandoiu (ICCABS, 2015)

Algorithms for prediction of viral transmission using analysis of intra-host viral populations. - Pavel Skums; Olga Glebova; David S. Campo; Nana Li; Zoya Dimitrova; Seth Sims; Leonid Bunimovich; Alex Zelikovsky; Yury Khudyakov (ICCABS, 2015)

GaussianCpG: A Gaussian model for detection of human CpG island. - Ning Yu 004; Xuan Guo; Alexander Zelikovsky; Yi Pan 001 (ICCABS, 2015)

ScaffMatch: scaffolding algorithm based on maximum weight matching. - Igor Mandric; Alex Zelikovsky (Bioinform., 2015)

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. - Pavel Skums; Alexander Artyomenko; Olga Glebova; Sumathi Ramachandran; Ion I. Mandoiu; David S. Campo; Zoya Dimitrova; Alex Zelikovsky; Yuri Khudyakov (Bioinform., 2015)

Searching High-Order SNP Combinations for Complex Diseases Based on Energy Distribution Difference. - Xiaojun Ding; Jianxin Wang 001; Alex Zelikovsky; Xuan Guo; Minzhu Xie; Yi Pan 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. - Serghei Mangul; Harry (Taegyun) Yang; Farhad Hormozdiari; Elizabeth Tseng; Alex Zelikovsky; Eleazar Eskin (ISBRA, 2016)

Computing and Combinatorics. - Zhipeng Cai 001; Alexander Zelikovsky (Algorithmica, 2016)

Special issue on Computing and Combinatorics Conference. - Zhipeng Cai 001; Alexander Zelikovsky (Theor. Comput. Sci., 2016)

CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology. - Yury Khudyakov; Ion I. Mandoiu; Pavel Skums; Alexander Zelikovsky (BCB, 2017)

Classification of HCV infections through sequence image normalization. - Sunitha Basodi; Pelin Burcak Icer; Pavel Skums; Yury Khudyakov; Alexander Zelikovsky; Yi Pan 001 (ICCABS, 2017)

Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning. - Pelin Icer Baykal; Alexander Artyomenko; Sumathi Ramachandran; Yury Khudyakov; Alex Zelikovsky; Pavel Skums (ICCABS, 2017)

Efficient filtering algorithm for detection of genetic similarity between large genomic datasets. - Viachaslau Tsyvina; David S. Campo; Seth Sims; Alex Zelikovsky; Yury Khudyakov; Pavel Skums (ICCABS, 2017)

Agent-Based in Silico Evolution of HCV Quasispecies. - Alexander Artyomenko; Pelin B. Icer; Pavel Skums; Sumathi Ramachandran; Yury Khudyakov; Alex Zelikovsky (ISBRA, 2017)

Modeling the Spread of HIV and HCV Infections Based on Identification and Characterization of High-Risk Communities Using Social Media. - Deeptanshu Jha; Pavel Skums; Alex Zelikovsky; Yury Khudyakov; Rahul Singh (ISBRA, 2017)

Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities. - Igor Mandric; Sergey Knyazev; Cory Padilla; Frank Stewart; Ion I. Mandoiu; Alex Zelikovsky (ISBRA, 2017)

Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data. - Igor Mandric; Yvette Temate-Tiagueu; Tatiana Shcheglova; Sahar Al Seesi; Alex Zelikovsky; Ion I. Mandoiu (Bioinform., 2017)

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire. - Ekaterina Gerasimov; Alex Zelikovsky; Ion I. Mandoiu; Yurij Ionov (BMC Bioinform., 2017)

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. - Alexander Artyomenko; Nicholas C. Wu; Serghei Mangul; Eleazar Eskin; Ren Sun; Alex Zelikovsky (J. Comput. Biol., 2017)

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. - Robert W. Harrison; Ion I. Mandoiu; Alexander Zelikovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Practical Approximations of Steiner Trees in Uniform Orientation Metrics. - Andrew B. Kahng; Ion I. Mandoiu; Alexander Zelikovsky (Handbook of Approximation Algorithms and Metaheuristics (1), 2018)

QoS Multimedia Multicast Routing. - Ion I. Mandoiu; Alex Olshevsky; Alexander Zelikovsky (Handbook of Approximation Algorithms and Metaheuristics (2), 2018)

ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome. - Yury Khudyakov; Ion I. Mandoiu; Pavel Skums; Alexander Zelikovsky (BCB, 2018)

A study of optimal cost-skew tradeoff and remaining suboptimality in interconnect tree constructions. - Kwangsoo Han; Andrew B. Kahng; Christopher Moyes; Alex Zelikovsky (SLIP@DAC, 2018)

Predicting Opioid Epidemic by Using Twitter Data. - Yubao Wu; Pavel Skums; Alex Zelikovsky; David Stiven Campo Rendon; Xueting Liao (ISBRA, 2018)

Repeat-aware evaluation of scaffolding tools. - Igor Mandric; Sergey Knyazev; Alex Zelikovsky (Bioinform., 2018)

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. - Pavel Skums; Alex Zelikovsky; Rahul Singh; Walker Gussler; Zoya Dimitrova; Sergey Knyazev; Igor Mandric; Sumathi Ramachandran; David S. Campo; Deeptanshu Jha; Leonid Bunimovich; Elizabeth Costenbader; et al. (Bioinform., 2018)

Automated quality control for a molecular surveillance system. - Seth Sims; Atkinson G. Longmire; David S. Campo; Sumathi Ramachandran; Magdalena Medrzycki; Lilia Ganova-Raeva; Yulin Lin; Amanda Sue; Hong Thai; Alexander Zelikovsky; Yury Khudyakov (BMC Bioinform., 2018)

Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants. - Viachaslau Tsyvina; David S. Campo; Seth Sims; Alex Zelikovsky; Yury Khudyakov; Pavel Skums (BMC Bioinform., 2018)

Special IssuePreface: 13th International Symposium on BioinformaticsResearch and Applications (ISBRA 2017). - Zhipeng Cai 001; Pavel Skums; Alexander Zelikovsky (J. Comput. Biol., 2018)

Workshop on Computational Advances in Molecular Epidemiology. - Yury Khudyakov; Ion I. Mandoiu; Pavel Skums; Alexander Zelikovsky (BCB, 2019)

Detecting Illicit Drug Ads in Google+ Using Machine Learning. - Fengpan Zhao; Pavel Skums; Alex Zelikovsky; Eric L. Sevigny; Monica Haavisto Swahn; Sheryl M. Strasser; Yubao Wu (ISBRA, 2019)

Inference of clonal selection in cancer populations using single-cell sequencing data. - Pavel Skums; Viachaslau Tsyvina; Alex Zelikovsky (Bioinform., 2019)

Preface: 14th International Symposium on Bioinformatics Research and Applications (ISBRA 2018). - Zhipeng Cai 001; Pavel Skums; Alexander Zelikovsky (J. Comput. Biol., 2019)

12 Grand Challenges in Single-Cell Data Science. - David Laehnemann; Johannes Köster; Ewa Szczurek; Davis J. McCarthy; Stephanie C. Hicks; Mark D. Robinson; Catalina A. Vallejos; Niko Beerenwinkel; Kieran R. Campbell; Ahmed Mahfouz; Luca Pinello; Pavel Skums; et al. (PeerJ Prepr., 2019)

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. - Ion I. Mandoiu; Pavel Skums; Alexander Zelikovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Benchmarking of computational error-correction methods for next-generation sequencing data. - Keith Mitchell; Jaqueline J. Brito; Igor Mandric; Qiaozhen Wu; Sergey Knyazev; Sei Chang; Lana S. Martin; Aaron Karlsberg; Ekaterina Gerasimov; Russell Littman; Brian L. Hill; Nicholas C. Wu; et al. (BCB, 2020)

Clustering Based Identification of SARS-CoV-2 Subtypes. - Andrew Melnyk; Fatemeh Mohebbi; Sergey Knyazev; Bikram Sahoo; Roya Hosseini; Pavel Skums; Alex Zelikovsky; Murray Patterson (ICCABS, 2020)

Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data. - Filipp Rondel; Akram Sadat Hosseini; Bikram Sahoo; Sergey Knyazev; Igor Mandric; Frank Stewart; Ion I. Mandoiu; Bogdan Pasaniuc; Alex Zelikovsky (ISBRA, 2020)

Preface Special Issue: 15th International Symposium on Bioinformatics Research and Applications (ISBRA 2019). - Zhipeng Cai 001; Pavel Skums; Alexander Zelikovsky (J. Comput. Biol., 2020)

Inference of mutability landscapes of tumors from single cell sequencing data. - Viachaslau Tsyvina; Alex Zelikovsky; Sagi Snir; Pavel Skums (PLoS Comput. Biol., 2020)

An SVM Based Approach to Study the Racial Disparity in Triple-Negative Breast Cancer. - Bikram Sahoo; Seth Sims; Alexander Zelikovsky (ICCABS, 2021)

A Novel Network Representation of SARS-CoV-2 Sequencing Data. - Sergey Knyazev; Daniel Novikov; Mark Grinshpon; Harman Singh; Ram Ayyala; Varuni Sarwal; Roya Hosseini; Pelin Icer Baykal; Pavel Skums; Ellsworth Campbell; Serghei Mangul; Alex Zelikovsky (ISBRA, 2021)

Epidemiological data analysis of viral quasispecies in the next-generation sequencing era. - Sergey Knyazev; Lauren Hughes; Pavel Skums; Alexander Zelikovsky (Briefings Bioinform., 2021)

Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020). - Zhipeng Cai 001; Pavel Skums; Yuri Porozov; Alexander Zelikovsky (J. Comput. Biol., 2021)

Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020). - Sumit Kumar Jha 001; Ion I. Mandoiu; Sanguthevar Rajasekaran; Pavel Skums; Alexander Zelikovsky (J. Comput. Biol., 2021)

Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019). - Ion I. Mandoiu; T. M. Murali 001; Giri Narasimhan; Sanguthevar Rajasekaran; Pavel Skums; Alexander Zelikovsky (J. Comput. Biol., 2021)

From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering. - Andrew Melnyk; Fatemeh Mohebbi; Sergey Knyazev; Bikram Sahoo; Roya Hosseini; Pavel Skums; Alex Zelikovsky; Murray Patterson (J. Comput. Biol., 2021)

Scalable Reconstruction of SARS-CoV-2 Phylogeny with Recurrent Mutations. - Daniel Novikov; Sergey Knyazev; Mark Grinshpon; Pelin B. Icer; Pavel Skums; Alex Zelikovsky (J. Comput. Biol., 2021)

Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data. - Filipp Rondel; Roya Hosseini; Bikram Sahoo; Sergey Knyazev; Igor Mandric; Frank Stewart; Ion I. Mandoiu; Bogdan Pasaniuc; Yuri Porozov; Alexander Zelikovsky (J. Comput. Biol., 2021)

Entropy Based Clustering of Viral Sequences. - Akshay Juyal; Roya Hosseini; Daniel Novikov; Mark Grinshpon; Alex Zelikovsky (ISBRA, 2022)

17th International Symposium on Bioinformatics Research and Applications (ISBRA 2021). - Zhipeng Cai 001; Pavel Skums; Alexander Zelikovsky (J. Comput. Biol., 2022)

Computational Approaches to Detect Illicit Drug Ads and Find Vendor Communities Within Social Media Platforms. - Fengpan Zhao; Pavel Skums; Alex Zelikovsky; Eric L. Sevigny; Monica Haavisto Swahn; Sheryl M. Strasser; Yan Huang 032; Yubao Wu (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Plastic: An Easy to Use and Modular Tool for Benchmarking Tumor Phylogeny Reconstruction Pipelines. - Akshay Juyal; Zahra Tayebi; Alexander Zelikovsky; Mauricio Soto Gomez; Simone Ciccolella; Gianluca Della Vedova; Murray Patterson (ICCABS, 2023)

Decoding Heterogeneity in Quadruple-Negative Breast Cancer: A Data-driven Clustering Approach. - Bikram Sahoo; Nikita Jinna; Padmashree Rida; Zandra Pinnix; Alex Zelikovsky (ICCABS, 2023)

Genetic Algorithm with Evolutionary Jumps. - Hafsa Farooq; Daniel Novikov; Akshay Juyal; Alexander Zelikovsky (ISBRA, 2023)

Graph-Based Motif Discovery in Mimotope Profiles of Serum Antibody Repertoire. - Hossein Saghaian; Pavel Skums; Yurij Ionov; Alex Zelikovsky (ISBRA, 2023)

Exploring Racial Disparities in Triple-Negative Breast Cancer: Insights from Feature Selection Algorithms. - Bikram Sahoo; Temitope Adeyeha; Zandra Pinnix; Alex Zelikovsky (ISBRA, 2023)

Deep Learning Reveals Biological Basis of Racial Disparities in Quadruple-Negative Breast Cancer. - Bikram Sahoo; Zandra Pinnix; Alex Zelikovsky (ISBRA, 2023)

Simulating Tumor Evolution from scDNA-Seq as an Accumulation of both SNVs and CNAs. - Zahra Tayebi; Akshay Juyal; Alexander Zelikovsky; Murray Patterson (ISBRA, 2023)

Efficient Approximate Kernel Based Spike Sequence Classification. - Sarwan Ali; Bikram Sahoo; Muhammad Asad Khan; Alexander Zelikovsky; Imdad Ullah Khan; Murray Patterson (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021). - Mukul S. Bansal; Ion I. Mandoiu; Marmar Moussa; Murray Patterson; Sanguthevar Rajasekaran; Pavel Skums; Alexander Zelikovsky (J. Comput. Biol., 2023)

Identifying Biomarkers Using Support Vector Machine to Understand the Racial Disparity in Triple-Negative Breast Cancer. - Bikram Sahoo; Zandra Pinnix; Seth Sims; Alex Zelikovsky (J. Comput. Biol., 2023)

Special Issue, Part I 18th International Symposium on Bioinformatics Research and Applications (ISBRA 2022). - Zhipeng Cai 001; Pavel Skums; Alexander Zelikovsky (J. Comput. Biol., 2023)

Reconstruction of Viral Variants via Monte Carlo Clustering. - Akshay Juyal; Roya Hosseini; Daniel Novikov; Mark Grinshpon; Alex Zelikovsky (J. Comput. Biol., 2023)

Machine Learning-Driven Discovery of Quadruple-Negative Breast Cancer Subtypes from Gene Expression Data. - Bikram Sahoo; Nikita Jinna; Padmashree Rida; Zandra Pinnix; Alex Zelikovsky (ISBRA (1), 2024)

Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes. - Fatemeh Mohebbi; Alexander Zelikovsky; Serghei Mangul; Gerardo Chowell; Pavel Skums (RECOMB, 2024)

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. - Zhipeng Cai 001; Alexander Zelikovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

Special Section: 12th International Computational Advances in Bio and Medical Sciences (ICCABS 2023). - Mukul S. Bansal; Wei Chen; Yury Khudyakov; Ion I. Mandoiu; Marmar Moussa; Murray Patterson; Sanguthevar Rajasekaran; Pavel Skums; Sharma V. Thankachan; Alex Zelikovsky (J. Comput. Biol., 2025)

Estimating Enzyme Expression and Metabolic Pathway Activity in Borreliella-Infected and Uninfected Mice. - Filipp Rondel; Hafsa Farooq; Roya Hosseini; Akshay Juyal; Sergey Knyazev; Serghei Mangul; Artem S. Rogovskyy; Alexander Zelikovsky (J. Comput. Biol., 2025)