On Multilabel Classification Methods of Incompletely Labeled Biomedical Text Data. - Anton Kolesov; Dmitry Kamyshenkov; Maria Litovchenko; Elena Smekalova; Alexey Golovizin; Alex Zhavoronkov (Comput. Math. Methods Medicine, 2014)

GrantMed: a new, international system for tracking grants and funding trends in the life sciences. - Yuri Nikolsky; Roman Gurinovich; Oleg Kuryan; Aleksandr Pashuk; Alexej Scherbakov; Konstantin Romantsov; Leslie C. Jellen; Alex Zhavoronkov (CoRR, 2015)

Aging Chart: a community resource for rapid exploratory pathway analysis of age-related processes. - Alexey Moskalev; Svetlana Zhikrivetskaya; Mikhail Shaposhnikov; Evgenia Dobrovolskaya; Roman Gurinovich; Oleg Kuryan; Aleksandr Pashuk; Leslie C. Jellen; Alex Aliper; Alex Peregudov; Alex Zhavoronkov (Nucleic Acids Res., 2016)

Evaluating race and sex diversity in the world's largest companies using deep neural networks. - Konstantin Chekanov; Polina Mamoshina; Roman V. Yampolskiy; Radu Timofte; Morten Scheibye-Knudsen; Alex Zhavoronkov (CoRR, 2017)

Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models. - Daniil Polykovskiy; Alexander Zhebrak; Benjamín Sánchez-Lengeling; Sergey Golovanov; Oktai Tatanov; Stanislav Belyaev; Rauf Kurbanov; Aleksey Artamonov; Vladimir Aladinskiy; Mark Veselov; Artur Kadurin; Sergey I. Nikolenko; et al. (CoRR, 2018)

Reinforced Adversarial Neural Computer for de Novo Molecular Design. - Evgeny Putin; Arip Asadulaev; Yan Ivanenkov; Vladimir Aladinskiy; Benjamín Sánchez-Lengeling; Alán Aspuru-Guzik; Alex Zhavoronkov (J. Chem. Inf. Model., 2018)

Effects of unpaired 1 gene overexpression on the lifespan of Drosophila melanogaster. - Alexey Moskalev; Ekaterina Proshkina; Alex Zhavoronkov; Mikhail Shaposhnikov (BMC Syst. Biol., 2019)

Medicinal Chemists versus Machines Challenge: What Will It Take to Adopt and Advance Artificial Intelligence for Drug Discovery? - Alex Zhavoronkov (J. Chem. Inf. Model., 2020)

Chemistry42: An AI-based platform for de novo molecular design. - Yan A. Ivanenkov; Alexander Zhebrak; Dmitry Bezrukov; Bogdan Zagribelnyy; Vladimir Aladinskiy; Daniil Polykovskiy; Evgeny Putin; Petrina Kamya; Alexander Aliper; Alex Zhavoronkov (CoRR, 2021)

COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity. - Vladimir Naumov; Evgeny Putin; Stefan Pushkov; Ekaterina Kozlova; Konstantin Romantsov; Alexander A. Kalashnikov; Fedor Galkin; Nina Tihonova; Anastasia Shneyderman; Egor Galkin; Arsenii Zinkevich; Stephanie M. Cope; et al. (PLoS Comput. Biol., 2021)

Longevity Foundation: Perspective on Decentralized Autonomous Organization for Special-Purpose Financing. - Evelyne Bischof; Alex Botezatu; Sergey Jakimov; Ilya Suharenko; Alexey Ostrovski; Andrey Verbitsky; Yury Yanovich; Alex Zhavoronkov; Garri Zmudze (IEEE Access, 2022)

AlphaFold Accelerates Artificial Intelligence Powered Drug Discovery: Efficient Discovery of a Novel Cyclin-dependent Kinase 20 (CDK20) Small Molecule Inhibitor. - Feng Ren; Xiao Ding; Min Zheng; Mikhail Korzinkin; Xin Cai; Wei Zhu; Alexey Mantsyzov; Alex Aliper; Vladimir Aladinskiy; Zhongying Cao; Shanshan Kong; Xi Long; et al. (CoRR, 2022)

nach0: Multimodal Natural and Chemical Languages Foundation Model. - Micha Livne; Zulfat Miftahutdinov; Elena Tutubalina; Maksim Kuznetsov; Daniil Polykovskiy; Annika Brundyn; Aastha Jhunjhunwala; Anthony Costa; Alex Aliper; Alex Zhavoronkov (CoRR, 2023)

Chemistry42: An AI-Driven Platform for Molecular Design and Optimization. - Yan A. Ivanenkov; Daniil Polykovskiy; Dmitry Bezrukov; Bogdan Zagribelnyy; Vladimir Aladinskiy; Petrina Kamya; Alex Aliper; Feng Ren; Alex Zhavoronkov (J. Chem. Inf. Model., 2023)

Exploring the Advantages of Quantum Generative Adversarial Networks in Generative Chemistry. - Po-Yu Kao; Ya-Chu Yang; Wei-Yin Chiang; Jen-Yueh Hsiao; Yudong Cao; Alex Aliper; Feng Ren; Alán Aspuru-Guzik; Alex Zhavoronkov; Min-Hsiu Hsieh; Yen-Chu Lin (J. Chem. Inf. Model., 2023)

Quantum Computing-Enhanced Algorithm Unveils Novel Inhibitors for KRAS. - Mohammad Ghazi Vakili; Christoph Gorgulla; AkshatKumar Nigam; Dmitry Bezrukov; Daniel Varoli; Alex Aliper; Daniil Polykovskiy; Krishna M. Padmanabha Das; Jamie Snider; Anna Lyakisheva; Ardalan Hosseini Mansob; Zhong Yao; et al. (CoRR, 2024)

PandaOmics: An AI-Driven Platform for Therapeutic Target and Biomarker Discovery. - Petrina Kamya; Ivan V. Ozerov; Frank W. Pun; Kyle Tretina; Tatyana Fokina; Shan Chen; Vladimir Naumov; Xi Long; Sha Lin; Mikhail Korzinkin; Daniil Polykovskiy; Alex Aliper; et al. (J. Chem. Inf. Model., 2024)

AttenhERG: a reliable and interpretable graph neural network framework for predicting hERG channel blockers. - Tianbiao Yang; Xiaoyu Ding; Elizabeth McMichael; Frank W. Pun; Alex Aliper; Feng Ren; Alex Zhavoronkov; Xiao Ding (J. Cheminformatics, 2024)

BindGPT: A Scalable Framework for 3D Molecular Design via Language Modeling and Reinforcement Learning. - Artem Zholus; Maksim Kuznetsov; Roman Schutski; Rim Shayakhmetov; Daniil Polykovskiy; Sarath Chandar; Alex Zhavoronkov (AAAI, 2025)

Application of the digital annealer unit in optimizing chemical reaction conditions for enhanced production yields. - Shih-Cheng Li; Pei-Hua Wang; Jheng-Wei Su; Wei-Yin Chiang; Tzu-Lan Yeh; Alex Zhavoronkov; Shih-Hsien Huang; Yen-Chu Lin; Chia-Ho Ou; Chih-Yu Chen (J. Cheminformatics, 2025)