Solving Generalized Maximum-Weight Connected Subgraph Problem for Network Enrichment Analysis. - Alexander A. Loboda; Maxim N. Artyomov; Alexey A. Sergushichev (WABI, 2016)

GAM: a web-service for integrated transcriptional and metabolic network analysis. - Alexey A. Sergushichev; Alexander A. Loboda; Abhishek Kumar Jha; Emma E. Vincent; Edward M. Driggers; Russell G. Jones; Edward J. Pearce; Maxim N. Artyomov (Nucleic Acids Res., 2016)

Ranking Vertices for Active Module Recovery Problem. - Javlon E. Isomurodov; Alexander A. Loboda; Alexey A. Sergushichev (AlCoB, 2017)

Shiny GATOM: omics-based identification of regulated metabolic modules in atom transition networks. - Mariia Emelianova; Anastasiia N. Gainullina; Nikolay Poperechnyi; Alexander A. Loboda; Maxim N. Artyomov; Alexey A. Sergushichev (Nucleic Acids Res., 2022)