Fine-Grained Hidden Markov Modeling for Broadcast-News Story Segmentation. - Warren R. Greiff; Alex Morgan 001; Randall K. Fish; Marc Richards; Amlan Kundu 003 (HLT, 2001)

Qanda and the Catalyst Architecture. - Pranav Anand; David Anderson; John D. Burger; John Griffith; Marc Light; Scott A. Mardis; Alexander A. Morgan (TREC, 2001)

MITRE's Qanda at TREC-11. - John D. Burger; Lisa Ferro; Warren R. Greiff; John C. Henderson; Scott A. Mardis; Alexander A. Morgan; Marc Light (TREC, 2002)

Rutabaga by any other name: extracting biological names. - Lynette Hirschman; Alexander A. Morgan; Alexander S. Yeh (J. Biomed. Informatics, 2002)

Background and Overview for KDD Cup 2002 Task 1: Information Extraction from Biomedical Articles. - Alexander S. Yeh; Lynette Hirschman; Alexander A. Morgan (SIGKDD Explor., 2002)

Gene Name Extraction Using FlyBase Resources. - Alexander A. Morgan; Lynette Hirschman; Alexander S. Yeh; Marc E. Colosimo (BioNLP@ACL, 2003)

Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup. - Alexander S. Yeh; Lynette Hirschman; Alexander A. Morgan (ISMB (Supplement of Bioinformatics), 2003)

Gene name identification and normalization using a model organism database. - Alexander A. Morgan; Lynette Hirschman; Marc E. Colosimo; Alexander S. Yeh; Jeffrey B. Colombe (J. Biomed. Informatics, 2004)

Data preparation and interannotator agreement: BioCreAtIvE Task 1B. - Marc E. Colosimo; Alexander A. Morgan; Alexander S. Yeh; Jeffrey B. Colombe; Lynette Hirschman (BMC Bioinform., 2005)

Overview of BioCreAtIvE task 1B: normalized gene lists. - Lynette Hirschman; Marc E. Colosimo; Alexander A. Morgan; Alexander S. Yeh (BMC Bioinform., 2005)

BioCreAtIvE Task 1A: gene mention finding evaluation. - Alexander S. Yeh; Alexander A. Morgan; Marc E. Colosimo; Lynette Hirschman (BMC Bioinform., 2005)

Evaluating the Automatic Mapping of Human Gene and Protein Mentions to Unique Identifiers. - Alexander A. Morgan; Benjamin Wellner; Jeffrey B. Colombe; Robert Arens; Marc E. Colosimo; Lynette Hirschman (Pacific Symposium on Biocomputing, 2007)

Automating document classification for the Immune Epitope Database. - Peng Wang 014; Alexander A. Morgan; Qing Zhang; Alessandro Sette; Björn Peters (BMC Bioinform., 2007)

Research Paper: Rapidly Retargetable Approaches to De-identification in Medical Records. - Ben Wellner; Matt Huyck; Scott A. Mardis; John S. Aberdeen; Alexander A. Morgan; Leonid Peshkin; Alexander S. Yeh; Janet Hitzeman; Lynette Hirschman (J. Am. Medical Informatics Assoc., 2007)

Unsupervised Method for Automatic Construction of a Disease Dictionary from a Large Free Text Collection. - Rong Xu; Kaustubh S. Supekar; Alex Morgan 001; Amar K. Das; Alan M. Garber (AMIA, 2008)

Investigation of Unsupervised Pattern Learning Techniques for Bootstrap Construction of a Medical Treatment Lexicon. - Rong Xu; Alexander A. Morgan; Amar K. Das; Alan M. Garber (BioNLP@HLT-NAACL, 2009)

Content-based microarray search using differential expression profiles. - Jesse M. Engreitz; Alexander A. Morgan; Joel Dudley; Rong Chen 006; Rahul Thathoo; Russ B. Altman; Atul J. Butte (BMC Bioinform., 2010)

Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants. - Alexander A. Morgan; Purvesh Khatri; Richard Hayden Jones; Minnie M. Sarwal; Atul J. Butte (BMC Bioinform., 2010)

Validating pathophysiological models of aging using clinical electronic medical records. - David P. Chen; Alexander A. Morgan; Atul J. Butte (J. Biomed. Informatics, 2010)

Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions. - Rong Chen 006; Tara K. Sigdel; Li Li 062; Neeraja Kambham; Joel Dudley; Szu-chuan Hsieh; R. Bryan Klassen; Amery Chen; Tuyen Caohuu; Alexander A. Morgan; Hannah A. Valantine; Kiran K. Khush; et al. (PLoS Comput. Biol., 2010)

ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression. - Jesse M. Engreitz; Rong Chen 006; Alexander A. Morgan; Joel Dudley; Rohan Mallelwar; Atul J. Butte (Bioinform., 2011)

Clinical utility of sequence-based genotype compared with that derivable from genotyping arrays. - Alexander A. Morgan; Rong Chen 006; Atul J. Butte (J. Am. Medical Informatics Assoc., 2012)

Multiplex meta-analysis of RNA expression to identify genes with variants associated with immune dysfunction. - Alexander A. Morgan; Vasilios J. Pyrgos; Kari C. Nadeau; Peter R. Williamson; Atul J. Butte (J. Am. Medical Informatics Assoc., 2012)

Multiplex Meta-Analysis of Medulloblastoma Expression Studies with External Controls. - Alexander A. Morgan; Matthew D. Li; Achal S. Achrol; Purvesh Khatri; Samuel H. Cheshier (Pacific Symposium on Biocomputing, 2014)

Session Introduction. - Alexander A. Morgan; Sean D. Mooney; Bruce J. Aronow; Steven E. Brenner (PSB, 2016)

Session Introduction. - Alexander A. Morgan; Dana C. Crawford; Joshua C. Denny; Sean D. Mooney; Bruce J. Aronow; Steven E. Brenner (PSB, 2017)

Session Introduction. - Dana C. Crawford; Alexander A. Morgan; Joshua C. Denny; Bruce J. Aronow; Steven E. Brenner (PSB, 2018)

Session introduction. - Steven E. Brenner; Martha L. Bulyk; Dana C. Crawford; Jill P. Mesirov; Alexander A. Morgan; Predrag Radivojac (PSB, 2019)

Session Introduction. - Steven E. Brenner; Martha L. Bulyk; Dana C. Crawford; Alexander A. Morgan; Predrag Radivojac; Nicholas P. Tatonetti (PSB, 2020)