CURVATURE: software for the analysis of curved DNA. - E. S. Shpigelman; Edward N. Trifonov; Alexander Bolshoy (Comput. Appl. Biosci., 1993)

Applicability of the multiple alignment algorithm for detection of weak patterns: periodically distributed DNA pattern as a study case. - Alexander Bolshoy; I. Ioshikhes; Edward N. Trifonov (Comput. Appl. Biosci., 1996)

Sequence Complexity and DNA Curvature. - Andrei E. Gabrielian; Alexander Bolshoy (Comput. Chem., 1999)

Curved DNA in promoter sequences. - Andrei E. Gabrielian; David Landsman; Alexander Bolshoy (Silico Biol., 1999)

Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity. - Olga G. Troyanskaya; Ora Arbell; Yair Koren; Gad M. Landau; Alexander Bolshoy (Bioinform., 2002)

Curvature distribution in prokaryotic genomes. - Limor Kozobay-Avraham; Sergey Hosid; Alexander Bolshoy (Silico Biol., 2004)

The method of N-grams in large-scale clustering of DNA texts. - Zeev Volkovich; Valery M. Kirzhner; Alexander Bolshoy; Eviatar Nevo; Abraham B. Korol (Pattern Recognit., 2005)

On prokaryotes' clustering based on curvature distribution. - Limor Kozobay-Avraham; Alexander Bolshoy; Zeev Volkovich (Advances in Web Intelligence and Data Mining, 2006)

Revisiting the relationship between compositional sequence complexity and periodicity. - Alexander Bolshoy (Comput. Biol. Chem., 2008)

Upstream curved sequences in E. coli are related to the regulation of transcription initiation. - Tamar Nov Klaiman; Sergey Hosid; Alexander Bolshoy (Comput. Biol. Chem., 2009)

Whole-genome prokaryotic clustering based on gene lengths. - Alexander Bolshoy; Zeev Volkovich (Discret. Appl. Math., 2009)

Prokaryote clustering based on DNA curvature distributions. - Limor Kozobay-Avraham; Sergey Hosid; Zeev Volkovich; Alexander Bolshoy (Discret. Appl. Math., 2009)

Genome Clustering - From Linguistic Models to Classification of Genetic Texts - Alexander Bolshoy; Zeev Volkovich; Valery M. Kirzhner; Zeev Barzily (Springer, 2010)

miRNA and tropism of human parvovirus B19. - Olga Berillo; Vladimir Khailenko; Anatoly Ivashchenko; Lior Perlmuter-Shoshany; Alexander Bolshoy (Comput. Biol. Chem., 2012)

Robust classifying of prokaryotic genomes. - Katerina Korenblat; Zeev Volkovich; Alexander Bolshoy (Comput. Biol. Chem., 2012)

Algorithms of an optimal integer tree labeling - Alexander Bolshoy; Valery M. Kirzhner (CoRR, 2013)