PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization. - Lukasz Kreft; Alexander Botzki; Frederik Coppens; Klaas Vandepoele; Michiel Van Bel (Bioinform., 2017)

ConTra v3: a tool to identify transcription factor binding sites across species, update 2017. - Lukasz Kreft; Arne Soete; Paco Hulpiau; Alexander Botzki; Yvan Saeys; Pieter J. De Bleser (Nucleic Acids Res., 2017)

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. - Michiel Van Bel; Tim Diels; Emmelien Vancaester; Lukasz Kreft; Alexander Botzki; Yves Van de Peer; Frederik Coppens; Klaas Vandepoele (Nucleic Acids Res., 2018)

The TriForC database: a comprehensive up-to-date resource of plant triterpene biosynthesis. - Karel Miettinen; Sabrina Iñigo; Lukasz Kreft; Jacob Pollier; Christof De Bo; Alexander Botzki; Frederik Coppens; Søren Bak; Alain Goossens (Nucleic Acids Res., 2018)

Protein Homeostasis Database: protein quality control in E.coli. - Reshmi Ramakrishnan; Bert Houben; Lukasz Kreft; Alexander Botzki; Joost Schymkowitz; Frederic Rousseau 001 (Bioinform., 2020)

A framework to assess the quality and impact of bioinformatics training across ELIXIR. - Kim T. Gurwitz; Prakash Singh Gaur; Louisa J. Bellis; Lee D. Larcombe; Eva Alloza; Balint Laszlo Balint; Alexander Botzki; Jure Dimec; Victoria Dominguez Del Angel; Pedro L. Fernandes; Eija Korpelainen; Roland Krause; et al. (PLoS Comput. Biol., 2020)

Acinetobase: the comprehensive database and repository of Acinetobacter strains. - Adam Valcek; James H. Collier; Alexander Botzki; Charles Van der Henst (Database J. Biol. Databases Curation, 2022)

Unipept Visualizations: an interactive visualization library for biological data. - Pieter Verschaffelt; James H. Collier; Alexander Botzki; Lennart Martens; Peter Dawyndt; Bart Mesuere (Bioinform., 2022)

PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants. - Michiel Van Bel; Francesca Silvestri; Eric M. Weitz; Lukasz Kreft; Alexander Botzki; Frederik Coppens; Klaas Vandepoele (Nucleic Acids Res., 2022)

SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models. - Kobe Janssen; Ramon Duran-Romaña; Guy Bottu; Mainak Guharoy; Alexander Botzki; Frederic Rousseau 001; Joost Schymkowitz (BMC Bioinform., 2023)