GenMAPP 2: new features and resources for pathway analysis. - Nathan Salomonis; Kristina Hanspers; Alexander C. Zambon; Karen Vranizan; Steven C. Lawlor; Kam D. Dahlquist; Scott Doniger; Joshua M. Stuart; Bruce R. Conklin; Alexander R. Pico (BMC Bioinform., 2007)

A search engine to identify pathway genes from expression data on multiple organisms. - Chunnuan Chen; Matthew T. Weirauch; Corey Powell; Alexander C. Zambon; Joshua M. Stuart (BMC Syst. Biol., 2007)

MAAMD: A Workflow to Standardize Meta-Analyses of Affymetrix Microarray Data. - Zhuohui Gan; Jianwu Wang 001; Nathan Salomonis; Ilkay Altintas; Andrew D. McCulloch; Alexander C. Zambon (HISB, 2012)

InSilico-ChIP: A Coregulation and Evolutionary Conservation Based Transcription Factor and Target Gene Predictor. - Matthew Munoz; Alexander C. Zambon (HISB, 2012)

GO-Elite: a flexible solution for pathway and ontology over-representation. - Alexander C. Zambon; Stan Gaj; Isaac Ho; Kristina Hanspers; Karen Vranizan; Chris T. A. Evelo; Bruce R. Conklin; Alexander R. Pico; Nathan Salomonis (Bioinform., 2012)

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data. - Inna Dubchak; Matthew Munoz; Alexander Poliakov; Nathan Salomonis; Simon Minovitsky; Rolf Bodmer; Alexander C. Zambon (Bioinform., 2013)

Using Kepler for Tool Integration in Microarray Analysis Workflows. - Zhuohui Gan; Jennifer C. Stowe; Ilkay Altintas; Andrew D. McCulloch; Alexander C. Zambon (ICCS, 2014)

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data. - Zhuohui Gan; Jianwu Wang 001; Nathan Salomonis; Jennifer C. Stowe; Gabriel G. Haddad; Andrew D. McCulloch; Ilkay Altintas; Alexander C. Zambon (BMC Bioinform., 2014)