Homology modeling of a voltage-gated potassium channel (human Kv7.1). - Alexander Goncearenco; Yasmin Karimi-Nejad; Konrad Koehler (BMC Bioinform., 2007)

Prototypes of elementary functional loops unravel evolutionary connections between protein functions. - Alexander Goncearenco; Igor N. Berezovsky (Bioinform., 2010)

Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins. - Alexander Goncearenco; Igor N. Berezovsky (Bioinform., 2011)

Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012. - Alexander Goncearenco; Priscila Grynberg; Olga B. Botvinnik; Geoff MacIntyre; Thomas Abeel (BMC Bioinform., 2012)

SPACER: server for predicting allosteric communication and effects of regulation. - Alexander Goncearenco; Simon Mitternacht; Taipang Yong; Birgit Eisenhaber; Frank Eisenhaber; Igor N. Berezovsky (Nucleic Acids Res., 2013)

MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions. - Minghui Li; Franco L. Simonetti; Alexander Goncearenco; Anna R. Panchenko (Nucleic Acids Res., 2016)

Nucleotide binding database NBDB - a collection of sequence motifs with specific protein-ligand interactions. - Zejun Zheng; Alexander Goncearenco; Igor N. Berezovsky (Nucleic Acids Res., 2016)

Exploring background mutational processes to decipher cancer genetic heterogeneity. - Alexander Goncearenco; Stephanie L. Rager; Minghui Li; Qing-Xiang Sang; Igor B. Rogozin; Anna R. Panchenko (Nucleic Acids Res., 2017)

Mutational signatures and mutable motifs in cancer genomes. - Igor B. Rogozin; Youri I. Pavlov; Alexander Goncearenco; Subhajyoti De; Artem G. Lada; Eugenia Poliakov; Anna R. Panchenko; David N. Cooper (Briefings Bioinform., 2018)

Finding driver mutations in cancer: Elucidating the role of background mutational processes. - Anna-Leigh Brown; Minghui Li; Alexander Goncearenco; Anna R. Panchenko (PLoS Comput. Biol., 2019)

Deriving and Using Descriptors of Elementary Functions in Rational Protein Design. - Melvin Yin; Alexander Goncearenco; Igor N. Berezovsky (Frontiers Bioinform., 2021)