VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota. - Oksana E. Glushchenko; Nikita A. Prianichnikov; Evgenii I Olekhnovich; Alexander I Manolov; Alexander V. Tyakht; Elizaveta V. Starikova; Vera Odintsova; Elena S. Kostryukova; Elena Ilina (Bioinform., 2019)

Genome Complexity Browser: Visualization and quantification of genome variability. - Alexander I Manolov; Dmitry Konanov; Dmitry V. Fedorov; Ivan Osmolovsky; Rinat Vereshchagin; Elena Ilina (PLoS Comput. Biol., 2020)

Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads. - Dmitry Konanov; Vladislav V. Babenko; Aleksandra M. Belova; Arina G. Madan; Daria I Boldyreva; Oksana E. Glushenko; Ivan Butenko; Dmitry E. Fedorov; Alexander I Manolov; Danil V. Krivonos; Vassili N. Lazarev; Vadim M. Govorun; et al. (Bioinform., 2023)