CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data. - Adam A. Margolin; Joel Greshock; Tara L. Naylor; Yael Mosse; John M. Maris; Graham Bignell; Alexander I. Saeed; John Quackenbush; Barbara L. Weber (Bioinform., 2005)

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results. - John C. Braisted; Srilatha Kuntumalla; Christine Vogel; Edward M. Marcotte; Alan R. Rodrigues; Rong Wang; Shih-Ting Huang; Erik S. Ferlanti; Alexander I. Saeed; Robert D. Fleischmann; Scott N. Peterson; Rembert Pieper (BMC Bioinform., 2008)