High-Performance Analysis of Biomolecular Containers to Measure Small-Molecule Transport, Transbilayer Lipid Diffusion, and Protein Cavities. - Alexander J. Bryer; Jodi A. Hadden-Perilla; John E. Stone; Juan R. Perilla (J. Chem. Inf. Model., 2019)

Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC. - Eric Wright; Mauricio H. Ferrato; Alexander J. Bryer; Robert Searles; Juan R. Perilla; Sunita Chandrasekaran (PLoS Comput. Biol., 2020)

Full scale structural, mechanical and dynamical properties of HIV-1 liposomes. - Alexander J. Bryer; Tyler Reddy; Edward Lyman; Juan R. Perilla (PLoS Comput. Biol., 2022)