Designs for Ultra-Tiny, Special-Purpose Nanoelectronic Circuits. - Shamik Das; Alexander J. Gates; Hassen A. Abdu; Garrett S. Rose; Carl A. Picconatto; James C. Ellenbogen (IEEE Trans. Circuits Syst. I Regul. Pap., 2007)

Quantifying Robustness in a Spatial Model of Metabolism-Boundary Co-Construction. - Eran Agmon; Alexander J. Gates; Valentin Churavy; Randall D. Beer (ALIFE, 2014)

Structure and Dynamics Affect the Controlability of Complex Systems: A Preliminary Study. - Alexander J. Gates; Luis M. Rocha (ALIFE, 2014)

Ontogeny and adaptivity in a model protocell. - Eran Agmon; Alexander J. Gates; Randall D. Beer (ECAL, 2015)

Control of complex networks requires both structure and dynamics. - Alexander J. Gates; Luis M. Rocha (CoRR, 2015)

Modularity and the Spread of Perturbations in Complex Dynamical Systems. - Artemy Kolchinsky; Alexander J. Gates; Luis M. Rocha (CoRR, 2015)

The Structure of Ontogenies in a Model Protocell. - Eran Agmon; Alexander J. Gates; Randall D. Beer (Artif. Life, 2016)

Exploring the Space of Viable Configurations in a Model of Metabolism-Boundary Co-construction. - Eran Agmon; Alexander J. Gates; Valentin Churavy; Randall D. Beer (Artif. Life, 2016)

On comparing clusterings: an element-centric framework unifies overlaps and hierarchy. - Alexander J. Gates; Ian B. Wood; William P. Hetrick; Yong-Yeol Ahn (CoRR, 2017)

The Impact of Random Models on Clustering Similarity. - Alexander J. Gates; Yong-Yeol Ahn (J. Mach. Learn. Res., 2017)

CANA: A python package for quantifying control and canalization in Boolean Networks. - Rion Brattig Correia; Alexander J. Gates; Xuan Wang; Luis M. Rocha (CoRR, 2018)

Historical comparison of gender inequality in scientific careers across countries and disciplines. - Junming Huang 001; Alexander J. Gates; Roberta Sinatra; Albert-László Barabási (CoRR, 2019)

CluSim: a python package for calculating clustering similarity. - Alexander J. Gates; Yong-Yeol Ahn (J. Open Source Softw., 2019)

Mapping Philanthropic Support of Science. - Louis M. Shekhtman; Alexander J. Gates; Albert-László Barabási (CoRR, 2022)

Reproducible science of science at scale: pySciSci. - Alexander J. Gates; Albert-László Barabási (Quant. Sci. Stud., 2023)

The increasing fragmentation of global science limits the diffusion of ideas. - Alexander J. Gates; Indraneel Mane; Jianjian Gao (CoRR, 2024)

Disparities in LLM Reasoning Accuracy and Explanations: A Case Study on African American English. - Runtao Zhou; Guangya Wan; Saadia Gabriel; Sheng Li 001; Alexander J. Gates; Maarten Sap; Thomas Hartvigsen (CoRR, 2025)

Quantifying Institutional Gender Inequality in Contemporary Visual Art. - Xindi Wang; Alexander J. Gates; Michael Resch 001; Albert-László Barabási (CoRR, 2025)