Building and analyzing protein interactome networks by cross-species comparisons. - Amy M. Wiles; Mark Doderer; Jianhua Ruan; Tingting Gu; Ravi Dashnamoorthy; Barron Blackman; Alexander J. R. Bishop (BMC Syst. Biol., 2010)

Multisource biological pathway consolidation. - Mark Doderer; Zachry Anguiano; Uthra Suresh; Ravi Dashnamoorthy; Alexander J. R. Bishop; Yidong Chen 002 (GENSiPS, 2011)

Identifying genes associated with chemotherapy response in ovarian carcinomas based on DNA copy number and expression profiles. - Fang-Han Hsu; Erchin Serpedin; Tzu-Hung Hsiao; Alexander J. R. Bishop; Edward R. Dougherty; Yidong Chen 002 (GENSiPS, 2011)

Computational tools for genome-wide R-loops identification and characterisation. - Rongjie Liu; Aparna Gorthi; Yufang Jin; Alexander J. R. Bishop; Yidong Chen 002 (Int. J. Comput. Biol. Drug Des., 2017)

Correlation AnalyzeR: functional predictions from gene co-expression correlations. - Henry E. Miller; Alexander J. R. Bishop (BMC Bioinform., 2021)

Exploration and analysis of R-loop mapping data with RLBase. - Henry E. Miller; Daniel Montemayor; Janet Li; Simon A. Levy; Roshan Pawar; Stella Hartono; Kumar Sharma; Bess Frost; Frédéric Chedin; Alexander J. R. Bishop (Nucleic Acids Res., 2023)