The khmer software package: enabling efficient nucleotide sequence analysis. - Michael R. Crusoe; Hussien F. Alameldin; Sherine Awad; Elmar Boucher; Adam Caldwell; Reed Cartwright; Amanda Charbonneau; Bede Constantinides; Greg Edvenson; Scott Fay; Jacob Fenton; Thomas Fenzl; et al. (F1000Research, 2015)

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. - Ksenia Khelik; Karin Lagesen; Geir Kjetil Sandve; Torbjørn Rognes; Alexander Johan Nederbragt (BMC Bioinform., 2017)

Coordinates and intervals in graph-based reference genomes. - Knut D. Rand; Ivar Grytten; Alexander Johan Nederbragt; Geir Storvik; Ingrid Kristine Glad; Geir Kjetil Sandve (BMC Bioinform., 2017)

Good enough practices in scientific computing. - Greg Wilson; Jennifer Bryan; Karen Cranston; Justin Kitzes; Lex Nederbragt; Tracy K. Teal (PLoS Comput. Biol., 2017)

Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. - Ivar Grytten; Knut D. Rand; Alexander Johan Nederbragt; Geir Storvik; Ingrid Kristine Glad; Geir Kjetil Sandve (PLoS Comput. Biol., 2019)

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads. - Ksenia Khelik; Geir Kjetil Sandve; Alexander Johan Nederbragt; Torbjørn Rognes (BMC Bioinform., 2020)

Ten quick tips for teaching with participatory live coding. - Alexander Johan Nederbragt; Rayna Michelle Harris; Alison Presmanes Hill; Greg Wilson (PLoS Comput. Biol., 2020)