Genescript: DNA Sequence Annotation Pipeline. - Alexander K. Hudek; Joseph Cheung; Andrew P. Boright; Stephen W. Scherer (Bioinform., 2003)

New Algorithms for Multiple DNA Sequence Alignment. - Daniel G. Brown 001; Alexander K. Hudek (WABI, 2004)

Ancestral sequence alignment under optimal conditions. - Alexander K. Hudek; Daniel G. Brown 001 (BMC Bioinform., 2005)

Binary Absorption in Tableaux-Based Reasoning for Description Logics. - Alexander K. Hudek; Grant E. Weddell (Description Logics, 2006)

Improvements in the Accuracy of Pairwise Genomic Alignment. - Alexander K. Hudek (2010)

FEAST: Sensitive Local Alignment with Multiple Rates of Evolution. - Alexander K. Hudek; Daniel Gregory Brown (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Interpreting keyword queries over web knowledge bases. - Jeffrey Pound; Alexander K. Hudek; Ihab F. Ilyas; Grant E. Weddell (CIKM, 2012)

Assertion Absorption in Object Queries over Knowledge Bases. - Jiewen Wu; Alexander K. Hudek; David Toman 001; Grant E. Weddell (KR, 2012)

Absorption for ABoxes. - Jiewen Wu; Alexander K. Hudek; David Toman 001; Grant E. Weddell (J. Autom. Reason., 2014)

On Enumerating Query Plans Using Analytic Tableau. - Alexander K. Hudek; David Toman 001; Grant E. Weddell (TABLEAUX, 2015)

A Dataset and an Examination of Identifying Passages for Due Diligence. - Adam Roegiest; Alexander K. Hudek; Anne McNulty (SIGIR, 2018)

A Reliable and Accurate Multiple Choice Question Answering System for Due Diligence. - Radha Chitta; Alexander K. Hudek (ICAIL, 2019)

Towards Protecting Sensitive Text with Differential Privacy. - Sam Fletcher; Adam Roegiest; Alexander K. Hudek (TrustCom, 2021)

Hash the Universe: Differentially Private Text Extraction with Feature Hashing. - Sam Fletcher; Adam Roegiest; Alexander K. Hudek (Trans. Data Priv., 2025)