Alexander E. Kel
According to our database1,
Alexander E. Kel
authored at least 74 papers
between 1993 and 2022.
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Bibliography
2022
2021
2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019
BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data.
Nucleic Acids Res., 2019
Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer.
BMC Bioinform., 2019
2018
Comput. Biol. Chem., 2018
2017
GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments.
Nucleic Acids Res., 2017
cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing.
J. Comput. Biol., 2017
2014
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information.
BMC Bioinform., 2014
2013
PLoS Comput. Biol., 2013
MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters.
BMC Bioinform., 2013
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Big Data, 2013
2012
3DTF: a web server for predicting transcription factor PWMs using 3D structure-based energy calculations.
Nucleic Acids Res., 2012
2010
Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates.
BMC Bioinform., 2010
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies.
BMC Bioinform., 2010
2008
Identification of Differentially Expressed Genes by Meta-Analysis of Microarray Data on Breast Cancer.
Silico Biol., 2008
2007
Nucleic Acids Res., 2007
J. Bioinform. Comput. Biol., 2007
Proceedings of the German Conference on Bioinformatics, 2007
2006
Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
Nucleic Acids Res., 2006
TRANSFAC<sup>®</sup> and its module TRANSCompel<sup>®</sup>: transcriptional gene regulation in eukaryotes.
Nucleic Acids Res., 2006
TRANSPATH<sup>®</sup>: an information resource for storing and visualizing signaling pathways and their pathological aberrations.
Nucleic Acids Res., 2006
Nucleic Acids Res., 2006
Beyond microarrays: Finding key transcription factors controlling signal transduction pathways.
BMC Bioinform., 2006
Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations.
Bioinform., 2006
2005
Signal-Theoretical DNA Similarity Measure Revealing Unexpected Similarities of E. coli Promoters.
Silico Biol., 2005
Composite Module Analyst: Tool for Prediction of DNA Transcription Regulation. Testing on Simulated Data.
Proceedings of the Advances in Natural Computation, First International Conference, 2005
Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation.
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005
2004
Silico Biol., 2004
Bioinform., 2004
Recognition of multiple patterns in unaligned sets of sequences: comparison of kernel clustering method with other methods.
Bioinform., 2004
Proceedings of the Regulatory Genomics, 2004
From Composite Patters to Pathways - Prediction of Key Regulators of Gene Expression.
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004
2003
Nucleic Acids Res., 2003
Nucleic Acids Res., 2003
Prediction of potential C/EBP/NF-kappaB composite elements using matrix-based search methods.
Silico Biol., 2003
Silico Biol., 2003
Whole Genome Human/Mouse Phylogenetic Footprinting of Potential Transcription Regulatory Signals.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
Modeling the G1/S transition in mammals -Bifurcation an alysis of elementary modules.
Proceedings of the German Conference on Bioinformatics, 2003
2002
Nucleic Acids Res., 2002
Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
2001
ClusterScan: A Tool for Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
MATCH<sup>TM</sup> - a tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
2000
Nucleic Acids Res., 2000
COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation.
Nucleic Acids Res., 2000
Kernel Method for Estimation of Functional Site Local Consensi: Classification of Transcription Initiation Sites in Eukaryotic Genes.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000
Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000
1999
Nucleic Acids Res., 1999
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms.
Nucleic Acids Res., 1999
E2F composite units in promoters of cell cycle genes.
Proceedings of the German Conference on Bioinformatics, 1999
1998
Nucleic Acids Res., 1998
A genetic algorithm for designing gene family-specific oligonucleotide sets used for hybridization: the G protein-coupled receptor protein superfamily.
Bioinform., 1998
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998
A hierarchy of databases for modeling gene regulatory mechanisms.
Proceedings of the German Conference on Bioinformatics, 1998
Combinatorial identification of promoters induced upon immune cell activation.
Proceedings of the German Conference on Bioinformatics, 1998
1997
TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.
Nucleic Acids Res., 1997
Identification of the significant conformational features of functional sites in B-DNA.
Proceedings of the German Conference on Bioinformatics, 1997
Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD).
Proceedings of the German Conference on Bioinformatics, 1997
1996
Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes.
Proceedings of the German Conference on Bioinformatics, 1996
Genetic Algorithm for Selection of Oligonucleotides for Identification by Hybridisation of Genomic DNA Fragments Possessing Gene Potential.
Proceedings of the German Conference on Bioinformatics, 1996
TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996
TRRD and COMPEL Databases an Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
Proceedings of the German Conference on Bioinformatics, 1996
Comparative Analysis of the Secondary Structure of mRNA Encoded by High- and Low-Expression Eukaryotic Genes.
Proceedings of the German Conference on Bioinformatics, 1996
WWWTRRD: Hypertext Information System an Transcription Regulation.
Proceedings of the German Conference on Bioinformatics, 1996
1995
Comput. Appl. Biosci., 1995
Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995
Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes.
Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995
1993
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites.
Comput. Appl. Biosci., 1993