TMA Navigator: network inference, patient stratification and survival analysis with tissue microarray data. - Alexander L. R. Lubbock; Elad Katz; David J. Harrison; Ian M. Overton (Nucleic Acids Res., 2013)

GPU-powered model analysis with PySB/cupSODA. - Leonard A. Harris; Marco S. Nobile; James C. Pino; Alexander L. R. Lubbock; Daniela Besozzi; Giancarlo Mauri; Paolo Cazzaniga; Carlos F. Lopez (Bioinform., 2017)

Ursprung: Provenance for Large-Scale Analytics Environments. - Lukas Rupprecht; James C. Davis 001; Constantine Arnold; Alexander L. R. Lubbock; Darren R. Tyson; Deepavali Bhagwat (SIGMOD Conference, 2019)

Thunor: visualization and analysis of high-throughput dose-response datasets. - Alexander L. R. Lubbock; Leonard A. Harris; Vito Quaranta; Darren R. Tyson; Carlos F. Lopez (Nucleic Acids Res., 2021)

SynLeGG: analysis and visualization of multiomics data for discovery of cancer 'Achilles Heels' and gene function relationships. - Mark Wappett; Adam Harris; Alexander L. R. Lubbock; Ian Lobb; Simon S. McDade; Ian M. Overton (Nucleic Acids Res., 2021)

Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python. - Alexander L. R. Lubbock; Carlos F. Lopez (Bioinform., 2022)