A Fast Prize-Collecting Steiner Forest Algorithm for Functional Analyses in Biological Networks. - Murodzhon Akhmedov; Alexander LeNail; Francesco Bertoni; Ivo Kwee; Ernest Fraenkel; Roberto Montemanni (CPAIOR, 2017)

Graph-Sparse Logistic Regression. - Alexander LeNail; Ludwig Schmidt; Johnathan Li; Tobias Ehrenberger; Karen Sachs; Stefanie Jegelka; Ernest Fraenkel (CoRR, 2017)

Shallow Sparsely-Connected Autoencoders for Gene Set Projection. - Maxwell P. Gold; Alexander LeNail; Ernest Fraenkel (PSB, 2019)

NN-SVG: Publication-Ready Neural Network Architecture Schematics. - Alexander LeNail (J. Open Source Softw., 2019)

Identifying patterns in amyotrophic lateral sclerosis progression from sparse longitudinal data. - Divya Ramamoorthy; Kristen Severson; Soumya Ghosh; Karen Sachs; Emily G. Baxi; Alyssa N. Coyne; Elizabeth Mosmiller; Lindsey Hayes; Aianna Cerezo; Omar Ahmad; Promit Roy; Steven Zeiler; et al. (Nat. Comput. Sci., 2022)