A method for using blocked and event-related fMRI data to study "resting state" functional connectivity. - Damien A. Fair; Bradley L. Schlaggar; Alexander Li Cohen; Francis M. Miezin; Nico U. F. Dosenbach; Kristin K. Wenger; Michael D. Fox; Abraham Z. Snyder; Marcus E. Raichle; Steven E. Petersen (NeuroImage, 2007)

Defining functional areas in individual human brains using resting functional connectivity MRI. - Alexander Li Cohen; Damien A. Fair; Nico U. F. Dosenbach; Francis M. Miezin; Donna L. Dierker; David C. Van Essen; Bradley L. Schlaggar; Steven E. Petersen (NeuroImage, 2008)

Resting-state functional connectivity in the human brain revealed with diffuse optical tomography. - Brian R. White; Abraham Z. Snyder; Alexander Li Cohen; Steven E. Petersen; Marcus E. Raichle; Bradley L. Schlaggar; Joseph P. Culver (NeuroImage, 2009)

Functional Brain Networks Develop from a "Local to Distributed" Organization. - Damien A. Fair; Alexander Li Cohen; Jonathan D. Power; Nico U. F. Dosenbach; Jessica A. Church; Francis M. Miezin; Bradley L. Schlaggar; Steven E. Petersen (PLoS Comput. Biol., 2009)

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. - Krzysztof J. Gorgolewski; Fidel Alfaro-Almagro; Tibor Auer; Pierre Bellec; Mihai Capota; M. Mallar Chakravarty; Nathan William Churchill; Alexander Li Cohen; R. Cameron Craddock; Gabriel A. Devenyi; Anders Eklund 002; Oscar Esteban; et al. (PLoS Comput. Biol., 2017)

Dynamic Missing-Data Completion Reduces Leakage of Motion Artifact Caused by Temporal Filtering that Remains After Scrubbing. - Seyhmus Guler; Burak Erem; Alexander Li Cohen; Onur Afacan; Simon K. Warfield (ISBI, 2020)

Reducing the Effects of Motion Artifacts in fMRI: A Structured Matrix Completion Approach. - Arvind Balachandrasekaran; Alexander Li Cohen; Onur Afacan; Simon K. Warfield; Ali Gholipour (IEEE Trans. Medical Imaging, 2022)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Agnese Zazio; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; et al. (Zenodo, 2025)