PaVESy: Pathway Visualization and Editing System. - Alexander Lüdemann; Daniel Weicht; Joachim Selbig; Joachim Kopka (Bioinform., 2004)

Hypothesis-driven approach to predict transcriptional units from gene expression data. - Dirk Steinhauser; Björn H. Junker; Alexander Lüdemann; Joachim Selbig; Joachim Kopka (Bioinform., 2004)

CSB.DB: a comprehensive systems-biology database. - Dirk Steinhauser; Björn Usadel; Alexander Lüdemann; Oliver Thimm; Joachim Kopka (Bioinform., 2004)

TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments. - Alexander Lüdemann; Katrin Strassburg; Alexander Erban; Joachim Kopka (Bioinform., 2008)