funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types. - Kathleen Oros Klein; Stepan Grinek; Sasha Bernatsky; Luigi Bouchard; Antonio Ciampi; Ines Colmegna; Jean-Philippe Fortin; Long Gao; Marie-France Hivert; Marie Hudson; Michael S. Kobor; Aurélie Labbe; et al. (Bioinform., 2016)

Experiment level curation of transcriptional regulatory interactions in neurodevelopment. - Eric Ching-Pan Chu; Alexander M. Morin; Tak Hou Calvin Chang; Tue Nguyen; Yi-Cheng Tsai; Aman Sharma; Chao Chun Liu; Paul Pavlidis (PLoS Comput. Biol., 2021)

Identifying reproducible transcription regulator coexpression patterns with single cell transcriptomics. - Alexander M. Morin; Eric Ching-Pan Chu; Paul Pavlidis (PLoS Comput. Biol., 2025)